Synechococcus sp. CBW1002: H8F24_10725
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Entry
H8F24_10725 CDS
T10440
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
synz Synechococcus sp. CBW1002
Pathway
synz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
synz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H8F24_10725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
synz03019
]
H8F24_10725
03016 Transfer RNA biogenesis [BR:
synz03016
]
H8F24_10725
Enzymes [BR:
synz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
H8F24_10725
Messenger RNA biogenesis [BR:
synz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
H8F24_10725
Transfer RNA biogenesis [BR:
synz03016
]
Prokaryotic type
tRNA degradation factors
H8F24_10725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
PCB_OB
S1_RRP5
OB_RRP5_4th
KH_KhpA-B
KH_PNO1_2nd
DUF3586
Motif
Other DBs
NCBI-ProteinID:
QPN58670
LinkDB
All DBs
Position
complement(2203655..2205784)
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AA seq
709 aa
AA seq
DB search
MQGQTQSISFDGREIRLTTGRFAPQAGGSVMVECGDTAVLVTATRSGGREGIDFLPLICD
YEERLYAAGRIPGSFMRRESRPPERATLIARLIDRPMRPLFPSWMRDDLQIVATCMSLDE
RVPPDVLAVTGASMATLLAKIPFHGPMAAVRVGLLGDDFVLNPSYREIERSELDLVVAGT
PAGVVMVEAGANQLPEQDVIEAIDFGYEAVSELIKAQLTLLKDLGIEQVLPEPRKDDITL
PAFLEKECAKAIGEVLKQFSQTKAERDEKLDAIKTEVTEKIACLNDDDAVKVAVSSNGKA
LGNTYKSLTKKLMRAQILTEGKRVDGRNLDEVRPISAAAGVLPKRVHGSGLFQRGLTQVL
SCATLGTPSDAQEMDDLNPSNEKTYLHHYNFPPYSVGETRPMRSPGRREIGHGALAERAL
IPVLPSKESFPYVLRVVSECLSSNGSTSMGSVCGSTLALMDAGVPLKAPVSGAAMGLIKE
GDEVRILTDIQGIEDFLGDMDFKVAGTEKGITALQMDMKITGLAVTCVAEAINQARPARL
HILEKMLEAIDKPRDILSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIED
GGIVTIASHDGAAAEEAQRIIEGLTRRVSEGEVFSGGVTRVIPIGAFVEILPGKEGMIHI
SQLSEARVEKVEDVVKVGDQVTVRVREIDNRGRINLTLRGVPQQEPVGV
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
gtgcaaggacaaactcagtcgatctccttcgatggtcgggagatccggctgaccaccggt
cggttcgctccccaggcggggggttcggtgatggtcgagtgcggcgatacggcggttctg
gtcaccgccacccgctccggtggtcgtgaaggcatcgattttctgcccctgatctgcgac
tacgaggaacggctctacgccgccggtcgcatcccgggcagcttcatgcggcgcgagagc
cgtccccccgagcgggccaccctgatcgcacggctgatcgatcggccgatgcggccgctc
ttccccagctggatgcgcgacgatctgcagatcgttgccacctgcatgtcgctcgatgaa
cgggttccgcccgatgtgctggcggtgaccggcgcttcgatggccaccctgctggccaag
attcccttccatggcccgatggcggcggtacgcgtgggcctgctgggcgacgacttcgtg
ctcaaccccagctatcgcgaaatcgaacgcagcgaactcgatctcgtggtggcaggaacc
cctgccggcgtggtgatggtggaggcgggcgccaaccagctgcccgagcaggatgtgatc
gaagccatcgacttcggctacgaagccgtgagcgaactgatcaaggcccagctgaccctg
ctcaaggatctcggcatcgagcaggtgctgcctgaaccccgcaaggacgacatcaccctg
ccggcgtttctggaaaaggaatgcgccaaggccatcggtgaagtgctcaagcagttctcc
cagaccaaggccgagcgcgacgaaaaacttgatgcgatcaagacggaagtgactgaaaag
atcgcttgcctgaatgacgatgatgccgtgaaggtggcggtgagcagcaatggcaaggcg
ctgggaaatacctacaagagcctcacgaagaagctgatgcgcgctcagatcctcaccgag
ggcaagcgtgtcgatggccgcaacctcgatgaagtgcgcccgatcagcgccgccgcgggc
gtgctgcccaagcgcgtgcatggctcgggcctgtttcagcgcggcctgacccaggtgctc
tcctgcgccaccctcggcacaccgagcgatgcgcaggagatggacgatctcaatccgtcc
aatgaaaagacctacctgcaccactacaacttccccccctattcggtgggtgaaaccagg
ccgatgcggtcgcccggtcgccgcgagatcggtcatggtgccctggctgagcgggccctg
atccccgtgctgcccagcaaggagagcttcccctacgtgctgcgggtggtgtcggagtgc
ctcagctccaacggctccacctcgatgggatcggtctgcggcagcaccctggccctgatg
gatgccggcgtgcctctcaaggcccccgtgagcggcgccgccatgggtctgatcaaggaa
ggcgatgaagtccgtatcctcaccgacatccaggggatcgaggatttcctcggagacatg
gacttcaaggtggctggcactgagaagggcatcaccgccctgcagatggacatgaagatc
accggcctggccgtcacctgcgtggccgaggcgatcaaccaggcccgtccagcccgcctc
cacatcctcgagaagatgctcgaggccatcgacaagccgcgtgacatcctcagcccccac
gcgccgcgcctgctcagcttccgcattgatcccgagctgatcggcaccgtgatcggcccc
ggcggccgcacgatcaagggcatcactgagcgcaccaacaccaagatcgacatcgaggat
ggcggcatcgtcacgatcgccagccacgatggggctgccgctgaggaagcgcagcgcatc
atcgaaggcctcacccgccgcgtcagcgagggcgaagtgttcagcggtggcgtcacccgg
gtgatcccgatcggtgccttcgtggaaatcctgcctggcaaggaaggcatgatccacatt
tctcagctctcggaagcacgggtcgagaaggtggaagatgtggtgaaggtgggtgatcag
gtcaccgttcgcgtccgcgagatcgacaaccgcggccggatcaacctgacgctgcggggc
gttccccagcaggagcctgtcggcgtctga
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