Synechococcus sp. CBW1002: H8F24_11745
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Entry
H8F24_11745 CDS
T10440
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
synz Synechococcus sp. CBW1002
Pathway
synz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
synz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H8F24_11745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
synz03019
]
H8F24_11745
03009 Ribosome biogenesis [BR:
synz03009
]
H8F24_11745
Enzymes [BR:
synz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H8F24_11745
Messenger RNA biogenesis [BR:
synz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H8F24_11745
Ribosome biogenesis [BR:
synz03009
]
Prokaryotic type
rRNA helicases
H8F24_11745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
AAA_30
B12-binding
DEDD_Tnp_IS110
AAA_22
CMS1
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QPN61708
LinkDB
All DBs
Position
2409344..2411233
Genome browser
AA seq
629 aa
AA seq
DB search
MPSSAEPLQASDNADAEDLNHDNSNRESRDVKPVTAAASTDTLKSSTTSEPEPAAPSGFA
SFGFASELLETLSAIGYEQPSPIQAAAIPELLLGRDLVGQAQTGTGKTAAFALPLLARLD
PEQRKPQVLVLAPTRELAMQVADAFNTYASRLPNVRVLAVYGGADFRDQIQQLRRGVQIV
VGTPGRVMDHMRQGTLDLSGLRALVLDEADEMLRMGFIDDVEWVLEQLPSERQVVLFSAT
MPAEIRRISHNYLRQPAEVTIRTKAADGGRIRQRYLMVHGPHKLPVLQRVLEAESSEGTI
IFARTKAITLTVAEFLESHGYEVAVLNGDVPQAQRERTIERLKDGRVDVLVATDVAARGL
DVERVGLVVNYDMPFDGEAYVHRIGRTGRAGRSGEAILFLTPRERRFLGGLERAVGRAIE
PMEVPSNATINQNRLDRLRQKLTNGLTTPIGTEEERALLSEILQRVAQEHEVSSDQLALV
ALQMSLVGKPLLLHGDEQWSQPAARGPARDSRSGSPRDRDGGIRRTIERRPAGRDGRSTG
APRSQEVSPVDADMDRFRIEVGWRDRIKPGNIVGAIANEAGIAGKMIGRIHIFDAHSTVD
LPKGMPEDVFENLRRLRVMNRELQITKLS
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
ttgccgagctctgctgaacccctccaagccagcgacaacgctgacgctgaagacctgaat
cacgacaacagcaatcgcgaaagccgtgatgtcaagccggtgaccgccgctgcatccaca
gacaccctgaagagcagcactacatcagagcctgagcctgcggcaccctccggttttgcc
agtttcggctttgcctccgagctgctcgaaaccctcagcgccatcggctacgaacagccg
tcaccgattcaggcagccgccatccccgagctgctgctcggccgggatctggtgggtcag
gcccagaccggtaccggcaagacggccgccttcgccctccccctgctggcccgtctcgat
cccgagcaacgcaaaccccaggtcctggtgctggcccccacccgggagcttgccatgcag
gtggcggatgccttcaacacctacgcctcccgcctgcccaacgtgcgcgtgctggcggtg
tacggcggcgccgacttccgcgaccagatccagcagcttcggcgcggcgtacagattgtt
gtgggcacgcctggccgggtgatggaccacatgcgccagggaactctcgatctctccggc
ctgcgtgccctggtgctcgacgaagccgatgagatgctccgcatgggcttcatcgacgac
gtggagtgggtgctggagcaactgcccagcgagcgccaggtggtgctcttctcggccacg
atgccggccgagatccggcgcatctcccacaactacctgcgccagccggcggaggtgacg
atccgcaccaaggcggccgacggcggcagaatccgtcagcgttacctgatggtgcacggc
ccccacaagctgccggtgctgcagcgggtgctggaggccgagtccagtgagggaacgatc
atctttgcccgcaccaaggcgatcaccctcaccgtggctgagtttctcgaaagccatggc
tacgaggtggccgtgctcaacggcgacgtgccccaggcgcagcgggagcgcacgatcgag
cggctcaaggacggccgggtcgacgtgctcgtagccaccgatgtggctgcccgcggcctc
gatgtggaacgcgtcggcctggtggtgaactacgacatgccctttgatggcgaggcctac
gtgcaccgcatcggtcgcactggccgggcgggccgcagcggcgaggcgatcctcttcctc
accccccgcgaacggcgcttcctcggaggcctggagcgggccgtgggccgtgccattgag
ccgatggaggtgcccagcaacgccaccatcaaccagaaccgccttgatcggctccgtcag
aagctcaccaacgggctcaccactccgatcggcaccgaggaggagcgcgccctgctcagc
gagatcctgcaacgcgtggcgcaggagcatgaggtgagcagcgaccagctggccctggtg
gctctgcagatgagcctggtcgggaagcccttgctgctgcacggagacgagcagtggagc
cagcccgcggcccgcggccccgcccgcgacagccgcagcggcagtccgcgcgatcgcgat
ggcggcatacgccgaacgattgagcggcgccccgccggccgggatggtcgcagcaccgga
gccccccgcagccaggaggtctcccccgtggatgcggacatggatcgcttccggatcgag
gtgggctggcgcgatcgcatcaaacccggcaacatcgtgggcgcaatcgccaatgaagcc
ggcatcgccggcaagatgatcggccggatccacatcttcgacgcccatagcactgtggac
ctgcccaaaggcatgcccgaagacgtgttcgaaaatctgcgccggctgcgggtgatgaac
cgcgagctgcagatcaccaagctctcctga
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