Synechococcus sp. CBW1002: H8F24_16185
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Entry
H8F24_16185 CDS
T10440
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K03090
RNA polymerase sigma-B factor
Organism
synz Synechococcus sp. CBW1002
Brite
KEGG Orthology (KO) [BR:
synz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
synz03021
]
H8F24_16185
Transcription machinery [BR:
synz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
H8F24_16185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
HTH_23
Sigma70_r4_2
Sigma70_r4
HTH_Tnp_ISL3
HTH_Tnp_1
Sigma70_ECF
HTH_28
HTH_DeoR
Motif
Other DBs
NCBI-ProteinID:
QPN59523
LinkDB
All DBs
Position
complement(3271243..3271977)
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AA seq
244 aa
AA seq
DB search
MLQYLQIVRPLALHYSRCCREPLDDLLQVGMLGLLRAAELYNQDRAVPFEAFARPHVRGA
ILHYLRDSVGCVRLPRRQVEMLDRLRVLGREIECQQGRTPGSEELRRALGLSPEQWHVLR
QGEQLKRAASLEGLVGTEPTALPDASREEVSGGHDDLTGFNGSSPTSVERLLANLDPALA
TLVRQVVLGGWSYRRVARQLQVSPMTARRWFLGALDQLRSQWGQLRLNPEGPAAGLGASV
LPGC
NT seq
735 nt
NT seq
+upstream
nt +downstream
nt
gtgctccagtacctccagattgtgcggcccctggccttgcactattcccgctgctgccgt
gagcccctggatgacctcctgcaggtcgggatgctggggctgctgcgcgccgccgagctc
tacaaccaggaccgcgctgtgccttttgaggcctttgcccggccccatgtgcggggcgcc
atcctccactacctgcgcgattccgtcggttgcgtgaggctgccccgtcgccaggtggag
atgctcgatcggttgcgggtgctgggacgggagatcgaatgccagcaggggcgcaccccc
ggctccgaggagctgcggcgggctctgggcctcagccccgagcagtggcatgtgctgcgc
cagggggagcaactcaagcgtgcggcttcgctggagggtctggtcggaaccgaacccact
gccctgccggatgccagccgggaggaagtctcaggcggtcacgatgacctgactggcttc
aacgggagcagcccgacatcggtggagcggctgctggccaacctcgacccggctctggcc
actctggtacgccaggtcgttctgggaggctggagctatcgccgcgtcgcccggcagctg
caggtgagtccgatgacggcccgccgctggtttcttggagcgctggatcagttgcgcagc
cagtgggggcaactgaggctcaatcctgagggtccagcggctggtctcggcgcatctgtg
cttccagggtgttga
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