Synechococcus sp. CBW1002: H8F24_16950
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Entry
H8F24_16950 CDS
T10440
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
synz Synechococcus sp. CBW1002
Pathway
synz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
synz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H8F24_16950 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
synz03400
]
H8F24_16950 (mfd)
Enzymes [BR:
synz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H8F24_16950 (mfd)
DNA repair and recombination proteins [BR:
synz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H8F24_16950 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UB2H
AAA_30
Cas3-like_C_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QPN59634
UniProt:
A0A7T1HQ09
LinkDB
All DBs
Position
complement(3430897..3434511)
Genome browser
AA seq
1204 aa
AA seq
DB search
MPLTALVRQLQQATLTSEVLERSKRPQRLRLSGAGRAARALVSSALAGAADAPLLVVVPT
LEEAGRWAALLELMGWGSCQLYPTSEGSPYEPFDPTSEITWGQLQVLSELLDGTEQGAKT
GNARRLAIVATERALQPHLPPPEALRAECLSLRKGDTVDLEVLAATLTRLGYERVPTIEQ
EGSWSRRGDIVDVFPVSAELPVRLEFFGEELEKLREFDPASQRSLDGIAVVRLTPTGYGP
LIAEALRESMPDGLEQLLSPEATEQLLEGGTPEGMRRLLGLAWERPASLLSYLPANTLIA
VDERRHCLSHGQLWVDHAGDHYRDVCEELARASGDTDAAAIAALLPPLLHRPPLEALEQI
DGFAGFDLAELHETDNHPNSLDLASRSVPAYPNAFGKLAGLVKGFVAEKARVWLLSAQPS
RAVALLEEHDCLARFVPNPADFPAIDRLIEQYTPVALKTRGTAEIEGLQLPAWKLVLITD
REFFGQHALAATGYVRRRRKAASRTVDPNKMQPGDFVVHRNHGIGRFLKLEKLAISGESR
DYLVVQYADGLLRVAADQLGSLGRYRATSDNPPDLNRMGGVAWTRAKERAQKAIRKVALD
LVKLYAERHQAPGFAFPADGPWQNELEDSFPYEPTPDQVKAIADVKRDMEQSKPMDRLVC
GDVGFGKTEVAIRAIFKAVTAGKQVAMLAPTTVLAQQHWRTLSERFAPYPLKVSLLNRFR
TATERKAISEGLAAGTVDVVVGTHQLLGKGTRFQQLGLLVVDEEQRFGVNQKEKIKALRK
DVDVLTLSATPIPRTLYMSLSGVREMSLITTPPPMRRPIKTHLASLDEEAVRSAIRQELD
RGGQVFYVVPRVQGIEEVAAQLRVMLPGLRLLVAHGQMAEGELESAMVAFNAGEADLMLC
TTIVESGLDIPRVNTILIEDAHIFGLAQLYQLRGRVGRSGIQAHAWLFYPGDASLSEAAR
QRLRAIQEFAQLGSGYQLAMRDMEIRGVGNLLGVEQSGQMETIGFDLYMEMLQESLAEIQ
GQDIPAVDDTQIDLPITAFIPGDWITENDEKMAAYRAAADCSSQEALVELAAGWVDRYGA
IPAPVISLLQLMKLKLLARRCGFSRIKSEKPNIALETPMEEPAFRLLRQGLPQHLHGRLV
YQAGSGSTAKVLARGLGVLPMDKQLDQLMEWLNQMAAQIPGADGLTETERAAQMKAQNQA
VLSL
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atgcccctcaccgccctggtgcgtcagctgcagcaggcgaccctcaccagtgaggtgctg
gagcgcagcaagcggccccagcgcctgcggctgagcggtgccggccgggcggcgcgggcc
ctggtcagcagtgccctggcgggggccgccgacgcgccgctgctggtggtggtgcccacc
cttgaggaagccggccgctgggcggccctgctggagctgatgggctggggcagctgccag
ctctaccccaccagcgagggcagcccctacgagccctttgatcccaccagtgagatcacc
tggggtcagctgcaggtgctcagcgaactgctggacgggacggagcagggggcgaagact
ggcaacgcccgtcgccttgccatcgtcgccacggagcgggctctccagccacaccttccg
ccgcccgaagccctcagagccgagtgcctgagcctgcgcaagggcgatacggtcgatctc
gaggtgctggctgcaacgctgacgcgcctgggttacgagcgggtgcccacgatcgagcag
gagggcagctggagccgccgcggcgacatcgtcgatgtgtttccagtgagtgctgagctg
cccgtgcggctggagttcttcggcgaggagctggagaagctgcgggagttcgatccggcc
tcgcagcgctcccttgatggcatcgccgtggtgcggctcacccccaccggctatggcccg
ctgatcgccgaggccctgcgcgagtcgatgcccgatgggctggagcagctgctcagcccc
gaggccaccgagcagttgctggagggcggcacaccggaggggatgcggcgcctgctgggt
ctggcctgggagcgacccgcctcactgctcagctatctgccggccaacaccctgatcgcg
gtggatgagcggcgccattgcctctcccatggccagctgtgggtcgaccacgccggcgac
cactaccgggatgtctgcgaggaattggcgcgggcctcgggcgacaccgatgctgccgcc
atcgctgccctgctgccgccgctgctgcatcgcccgccgcttgaggccctggagcagatc
gatggcttcgccggctttgatctggcggaactgcacgagaccgacaaccaccccaacagc
ctggatctggccagccgctcggtgccggcctatcccaacgccttcggcaagctggcgggc
ctggtcaagggcttcgtggcggagaaggcaagagtgtggctgctctcggcccagcccagc
cgcgccgttgccctgctggaggaacacgactgcctcgcccgcttcgttcccaatccggcc
gactttccggccatcgatcgattgatcgagcagtacacccccgtggcgctcaagacgcgg
ggcaccgctgagatcgagggcctgcaattgccggcctggaagctggtactgatcaccgat
cgcgagttcttcggccagcacgccctggcggccacgggctatgtgcgccggcgtcgcaag
gccgccagtcgcacggtcgacccgaacaagatgcagccgggtgatttcgtggtgcaccgc
aaccatggcatcggccgcttcctgaagctggaaaagctggcgatcagcggtgaatcgcgc
gattacctggtggtgcaatacgccgatgggttgctgcgcgtcgccgccgaccagctgggc
agcctcggccgctaccgcgccaccagcgacaacccgccggatctgaaccgcatgggcggt
gtggcctggaccagggccaaggagcgggcccagaaggcgatccgcaaggtggcgctcgat
ctggtgaagctctacgccgaacggcaccaggcaccggggtttgccttccccgcggatggc
ccctggcagaacgaactcgaagactcgttcccctacgaacccacccccgatcaggtgaag
gcgatcgcggacgtcaagcgtgacatggagcagtccaagccgatggatcggctggtctgc
ggcgacgtgggcttcggcaagaccgaggtggcgatccgcgccatcttcaaggccgtcact
gcaggcaagcaggtggcgatgctggcccccaccacggtgctggcgcagcagcactggcgc
accttgagtgagcgttttgccccctatccgctcaaggtgagcctgctgaaccgcttccgc
accgctaccgaacgcaaggcgatcagcgaggggctggccgccggcaccgtggatgtggtg
gtgggcacccatcagctgctgggcaagggcacccgctttcagcagctgggcctgctggtg
gtggatgaggagcagcgtttcggtgtgaatcagaaggaaaagatcaaggcactgcggaag
gatgtggatgtgctcaccctctcggccacgccaatcccccgcaccctctatatgagcctg
tcgggggtgcgggaaatgagcctgatcaccacgccgccgccgatgcgtcgcccgatcaag
acccatctggcctccctggatgaagaggcggtgcgcagtgccatccgtcaggaactggat
cgcggtggccaggtgttctatgtggtgccgcgggtgcaggggattgaggaggtggccgcc
cagctgcgggtgatgctgccggggttgcggctgctggtggcccacggccagatggcggag
ggagaactggagagcgccatggtggcgttcaatgccggtgaggccgatctgatgctctgc
accacgatcgtggagagcggtctggatattccccgcgtcaacacgatcctgatcgaggat
gcccacatattcggcctggcccagctctatcagctgcgtggtcgggtaggacgcagcggc
atccaggcccatgcctggctgttctatcccggtgatgcgtccctcagtgaagcggcgcgg
caacggctgcgggcgattcaggaattcgcccagctcggcagtggctaccagctggccatg
cgcgacatggagatccgcggcgtgggcaatctgctgggggtggagcagagcggccagatg
gaaacgatcggcttcgatctctatatggagatgctgcaggaatccctcgcggagatccag
gggcaggacatccccgccgtggacgacacccagatcgatctaccgatcacggcctttatc
ccaggcgactggatcaccgagaacgacgagaagatggcggcctaccgggcggctgccgac
tgctccagccaggaggctctggtggagctggccgccggctgggtcgatcgctatggcgcc
atcccggcaccggtgatctcgctgctgcagctgatgaagctgaagctgctggccaggcgt
tgcggcttctcccgcatcaaatcagagaaacccaacatcgccctggaaacaccgatggag
gagcccgccttccgcctgctgcgtcagggtctgccccagcacctgcacggccggttggtc
tatcaggccggtagtggcagcaccgccaaggtgctggcccgtggcctgggggtgctgccg
atggataagcagctggaccagctgatggaatggctcaaccagatggccgcccagatcccc
ggggcggacggcctcaccgagactgagcgggcagcgcagatgaaggcccagaaccaggcg
gtgctgagcctttga
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integrated database retrieval system
