Synechococcus sp. CBW1002: H8F24_16985
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Entry
H8F24_16985 CDS
T10440
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
synz Synechococcus sp. CBW1002
Pathway
synz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
synz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H8F24_16985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
synz03019
]
H8F24_16985
Enzymes [BR:
synz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H8F24_16985
Messenger RNA biogenesis [BR:
synz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H8F24_16985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
SPOR
CMS1
Motif
Other DBs
NCBI-ProteinID:
QPN59640
UniProt:
A0A7T1MD80
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All DBs
Position
3438505..3439869
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AA seq
454 aa
AA seq
DB search
MNHEWLPLQRSPDSTGEPPAVDFDSLGLGEPLLRAVADKGYRVPSPIQRDCIPAVLSGRD
VMAAAQTGTGKTAGFTLPMLERLRHGPHARAGVVRALVLTPTRELAAQVGESVTAYGRYL
DLRSDVVFGGVKVNPQISRLQRGTDVLVATPGRLMDLHQQKALRLDRVEILVLDEADRML
DMGFIRDIQKILALLPAKRQNLLFSATFNPSIRRLATGLLHNPLQLQASPENRTATTVEH
ILHPCDMGRKPDLLCHLIASNDWRQVLVFSRTKHGANRLAERLTQEGMAAAAIHGNKSQG
ARTRALAGFKSGELRVLVATDLAARGIDIHQLPHVVNLDLPNQAEDYVHRIGRTGRAGHN
GHAVSLVAAEEHELLRAIEKMIGTALPRQEVPGFEPKVLSAPPLDLSGGRGRGGPPRTGS
RRTSSSAPSGRRGGGGGRSEAGRPESGRRPQRRG
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgaaccacgaatggcttcccctgcagcgctctcccgattccaccggcgagccccccgcc
gtcgacttcgactctcttgggctcggcgagcctctgttgagggctgtggccgacaagggc
tatcgggttccctcgccgattcagcgggattgcattccggcagtgctgagcggccgcgac
gtgatggccgccgcccagaccggcaccggcaagaccgccggcttcaccctgccgatgctg
gagcgtctgcgccatgggccccatgcccgggccggcgtggttcgagccctggtgctcacc
cccacccgcgaactcgccgcccaggtgggtgaaagcgtgaccgcctatggccgctacctg
gatctgcgctccgacgtggtcttcggtggagtgaaggtgaatccccagatctcccgtctg
cagcggggcaccgacgtgctggtggccacgcccggtcggctgatggatctccatcagcag
aaggctctccgcctggatcgcgtcgagatcctggtgctcgatgaagccgatcggatgctc
gacatgggcttcatccgcgacatccagaagatcctggccctgctgccggccaagcgtcag
aacctgctgttctcagcaaccttcaacccctcgatccgccggctggccacggggctgctg
cacaaccccctgcagcttcaggcctcccccgagaatcgaaccgccaccacggtggagcac
atcctccatccctgcgacatggggcggaaaccggatctgctctgccatctgattgccagc
aatgactggcggcaagtgctggtgttctcccgcaccaagcacggcgccaaccgcctggcc
gaacggctcacccaggaggggatggcggcggcggcgatccacggcaacaagagccagggg
gcccgcaccagggccctggcgggattcaagagcggcgagttgcgggttctggtggcgacc
gatcttgccgcccgcggcatcgacattcaccagttgccccacgtggtgaatctggatctg
cccaaccaggcggaagactatgtccatcgcatcggccgcaccggccgtgccggccacaac
ggccacgccgtgtctctcgtggcggcggaggagcatgagctgctgcgtgccatcgagaag
atgatcggcaccgccctgccgcgccaggaggtgcctgggtttgaacccaaggttctgtca
gcgcctcccctggatctgagcggcggccggggccggggcggcccaccccgcacaggcagc
cgcaggacttcatcatctgcaccgagtggccgccgtggtgggggcggcgggcggtccgaa
gcaggtcgccctgaatccggccggcggccccagcgacggggctga
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