Synechocystis sp. IPPAS B-1465: C7I86_04270
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Entry
C7I86_04270 CDS
T05368
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
syo
Synechocystis sp. IPPAS B-1465
Brite
KEGG Orthology (KO) [BR:
syo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
syo03009
]
C7I86_04270
Enzymes [BR:
syo01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
C7I86_04270
Ribosome biogenesis [BR:
syo03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
C7I86_04270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
TRM5-TYW2_MTfase
Methyltransf_15
Methyltransf_31
Cons_hypoth95
Methyltransf_25
MTS
RrnaAD
Methyltransf_11
Motif
Other DBs
NCBI-ProteinID:
AVP88966
LinkDB
All DBs
Position
complement(909603..910994)
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AA seq
463 aa
AA seq
DB search
MTQSNNFATSPLWQQGSVVELTITGLNHQGEGIGRFNERVVFVPDTAPGDRLEVRLVKVK
RNYALAQLLKILEPSVQRTRPSCIVADKCGGCQWQHLDYQFQVESKQQQIIDALERIGGF
TTLPLEPLLQSPASLGYRNKATYPLSRSKTGQVQAGYYRKGSHRLVNINQCPVQDDRLNL
LLTEVKKDIENRGWSIYDEEKKQGKLRHLSLRIGQRTGEMLLTLISAHKGLPDLEEQAGE
WLERYPDLGGICLNIQPEPNNRIFGDETVVIAGRGICREKFADLSFSLGANTFFQVNSGA
AELLLTRLQQALNLQGAELLVDAYAGVGTFTLPLARQVRQAIAIEVNQDSVHQGQRNAEI
NQIANVDFLAGTVETVLPTLSEIPDVLLLDPPRKGCAPEVLREIIRQRPEKIAYISCQPP
TLARDLKFLCAEGFYGITWVQGCDFFPQTAHVECAVILKAVNG
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgacccaaagtaataatttcgccactagccctctttggcaacaggggtccgtagtggaa
ctgaccattaccggcctcaatcaccaaggggagggtattggccgctttaatgagcgagta
gtgtttgtgcccgacacggcccccggcgatcgcctggaagtccgcttggtaaaagtcaaa
agaaattatgccttggcccaattgctcaaaattttagaaccttctgtccagcgcacccgc
ccgtcctgcattgtggcggataaatgtggcggttgccaatggcaacatctggattatcaa
ttccaggtagaaagtaagcaacaacaaattattgacgccctggagcgtattggtggtttc
accactttgcccctggagcctctattacagtcccccgctagcttgggttatcgcaacaaa
gccacctatcccctaagtcgctccaaaaccggccaggtgcaagctggttattaccgcaag
ggtagccatcgtttggtaaatattaaccaatgccctgtgcaggatgatcgcctaaattta
ttgctgaccgaggtgaagaaagatattgaaaatcggggttggtctatctatgacgaagag
aaaaagcagggcaaattacgtcacctaagcctacgcattggccaacgtacgggggaaatg
ttactgaccctgatttcggcccataaaggtttaccggatttggaagaacaggctggggaa
tggttggagcgctatcccgatttgggcggcatttgtttaaatattcagcccgaacccaac
aatcgcatttttggcgatgagaccgtggtgattgcagggcggggtatttgtcgagaaaag
tttgctgatctgagctttagcctgggggctaatacgtttttccaagttaacagcggggcg
gcagagctactgttaaccaggcttcagcaagcattaaatttgcaaggcgccgaattgttg
gtggacgcctatgctggggtgggcactttcaccctccccctcgcccgccaagtccgccag
gcgatcgccattgaggtcaaccaagattcggtgcaccagggacagcgcaacgctgagatc
aatcagattgccaatgtggattttttggctggtaccgtagagaccgttttacccaccctg
tcagagattcccgatgttttactccttgatcctccccgtaagggttgtgcaccagaagtg
ctcagggaaattatccgacagcgccccgaaaaaattgcctacattagttgccagcccccc
accctagcgagggacttgaaatttctctgtgccgagggcttctatggaattacctgggtt
cagggttgtgatttctttccccaaacagcccatgtggagtgtgcagtaattctcaaagcg
gtcaatggttaa
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