Synechocystis sp. IPPAS B-1465: C7I86_04570
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Entry
C7I86_04570 CDS
T05368
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
syo
Synechocystis sp. IPPAS B-1465
Pathway
syo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C7I86_04570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syo03019
]
C7I86_04570
03400 DNA repair and recombination proteins [BR:
syo03400
]
C7I86_04570
Enzymes [BR:
syo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C7I86_04570
Messenger RNA biogenesis [BR:
syo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C7I86_04570
DNA repair and recombination proteins [BR:
syo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C7I86_04570
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
AVP89016
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All DBs
Position
974053..975489
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AA seq
478 aa
AA seq
DB search
MADRQSLEEALRRIWGYDHFRYPQGEVIDCLLARRDCLVVLPTGGGKSICFQLPALLGEG
LTLVVSPLVALMEDQVQSLRRQNLPAACLHSQLSRPERKQVLYQLGQQQLKLLYLSPETL
LSEPVWNLLRQPQVKLQGIMLDEAHCLVQWGDSFRPAYRRLGALRRGLGRDKGQIPLAAF
TATADRQQQNLIVEGLNLRSPECFQVSPHRPQLHLKVKMVLSEYCRRQQLRRFLLKHLQE
SGLIYVRTRTMAINLAQWLQERGFDSEAYHGGLGPHQRRQLEQKWLTGQISSVVCTNAFG
LGIDKPDTRWVLHYQAPLMLMDYLQEVGRAGRDLQPAECLTLVSEPTGWLDSGDRQLRQY
FLSQASKYLQRAEVLSQQIPSQGNLGQLKAHFPDLEMALAWLHRRGNLEWLDPFNYRINP
GHYQANPLEELKSQYRLMTQYLTTSRCRWQTILVAFGDNSPAARRPCGTCDNCLVGRC
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atggctgatcgccaatcgttggaagaagctctccgccgaatttggggctatgaccacttt
cgctatccccagggagaagtaattgattgcctattggccaggcgggattgtctggtggta
ctacccactggaggagggaaatctatttgctttcaattgccggcattattgggggaggga
ttaaccctggtggtttcaccgttggtggccctcatggaagaccaggtacaaagtttacgt
aggcaaaatctgcccgccgcctgtctccatagccaattgagtcgccccgaaagaaaacag
gtgttgtaccaattggggcaacagcaactaaagctcctttacctttcgccggaaaccctg
ctgagtgagccagtctggaatttgctccggcaaccccaggtcaaattgcaaggaatcatg
ctcgatgaagcccattgtttggtgcagtggggagatagttttcgtcctgcctaccgccgt
ttgggagccctgcgtcggggattaggcagagacaagggccagattcccctggccgccttc
accgccacagccgatcgccagcaacagaatttgatcgtagaaggattgaatttgcgatcg
ccggagtgttttcaggtcagcccccatcgcccccaactacatctgaaagtcaaaatggtg
ctgagtgaatattgccgccggcaacaattacggcgttttttgctcaagcatctccaggaa
agcggtttgatttacgtccgtacccgcaccatggccatcaacttagcccaatggttgcag
gaacggggctttgacagcgaagcttaccatggcggtttgggcccccaccaacgacgacag
ttggaacaaaaatggttaacggggcaaatttcttcggtggtttgcaccaatgcctttggc
ctgggcatagacaagcccgatacccgttgggtgttacattaccaagcccccctgatgttg
atggattatctccaggaagtgggacgggccggacgagatttgcaaccggcagaatgtctc
accttagttagtgaacccaccggttggttggactctggcgatcgccaattgcgtcagtat
tttttgagtcaagccagcaaatatctacaacgagccgaggtcttgagtcaacaaattcca
tcccagggcaacctagggcaactaaaagcccattttcccgatttggaaatggctctggcg
tggctccaccgtcggggtaatttagagtggttagatccatttaactaccgcattaacccc
ggccattaccaggccaatcccctggaggaattgaaaagccagtatcgcctgatgacccaa
tacctgaccacttcccgttgtcgttggcaaacgattttggttgcctttggtgacaattct
ccggcggcgaggcgaccctgtggcacctgtgataattgtttagttggacgctgctaa
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