Synechocystis sp. IPPAS B-1465: C7I86_08795
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Entry
C7I86_08795 CDS
T05368
Symbol
rpoC1
Name
(GenBank) DNA-directed RNA polymerase subunit gamma
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
syo
Synechocystis sp. IPPAS B-1465
Pathway
syo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
syo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C7I86_08795 (rpoC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
syo03021
]
C7I86_08795 (rpoC1)
03400 DNA repair and recombination proteins [BR:
syo03400
]
C7I86_08795 (rpoC1)
Enzymes [BR:
syo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C7I86_08795 (rpoC1)
Transcription machinery [BR:
syo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C7I86_08795 (rpoC1)
DNA repair and recombination proteins [BR:
syo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C7I86_08795 (rpoC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Cas9-BH
Motif
Other DBs
NCBI-ProteinID:
AVP89756
LinkDB
All DBs
Position
1852929..1854809
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AA seq
626 aa
AA seq
DB search
MKAQSEPRFDYVKIAIASPERIRQWGERTLPNGTVVGEVTKPETINYRTLKPEMDGLFCE
KIFGPSKDWECWCGKYKRARHRGIVCERCGVEVTESRVRRHRMGYIKLAAPVTHVWYLKG
IPSYLSILLDMALRDVEQIVYFNAYVVLNPGNASNLQYKQLLTEDQWVEIEDQIYAEDSE
LEGIEVGIGAEAVQRLLAELQLEEVAEKLREEILASKGQKRAKLIKRLRVIDNFIATHSQ
AEWMTLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVR
NEKRMLQEAVDALIDNGRRGRTVVGANNRALKSLSDIIEGKQGRFRQNLLGKRVDYSGRS
VIVVGPNLKIYQCGLPREMAIELFQPFVIHRLIKLGIVNNIKAAKKLILKGDPQIWSVLE
EVITGHPVMLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLS
LEAQCEARLLMLACHNVLSPATGKPIVAPSQDMVLGCYYLTAENPNAQKGAGRYFAGIED
ALRAYDHGQVDLHSQIWIRHLDEDVVTEKPDTEVIKTEDLGDGTVMKYYRERKIREGVDG
EIITQYIQTTPGRIIYNKTIAEALVF
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcccaatcagaacctcggtttgattacgtcaaaattgcgatcgcctcccccgaa
aggatccgccagtggggagaacgcaccctaccgaacggcaccgtagtgggggaagtgacc
aaacccgaaaccattaactaccggacgttaaagccggaaatggacggtctgttctgtgaa
aaaatctttggtccttccaaggattgggaatgctggtgtggcaaatataaacgggcacgg
caccggggcattgtttgtgagcgctgtggcgtggaagtaacggaatctagggttcgtcgt
caccgcatgggctacatcaaattagccgcccccgtcacccacgtttggtatctcaaaggc
atccctagctatctcagcattcttttggacatggccctgcgggatgtggagcagatcgtt
tacttcaacgcctacgtggtgctcaaccccggcaatgccagcaatctgcaatataagcaa
ctcctgactgaagaccagtgggtagaaattgaagaccaaatttatgctgaagattctgag
ctagaaggtatcgaagtgggcattggtgcggaagcggtgcaaaggctcttagcagaattg
caactggaagaagtggcggaaaagctccgggaagaaattctggctagtaaaggacaaaag
cgggccaagctgattaaacgtctgcgggtaattgataatttcatcgctacccactcccaa
gcggaatggatgaccttggatgtgatccctgttattccgccagatttacgtcccatggtg
cagttggatggggggcgctttgccacctctgacctgaatgatctctatcgtcgggtaatc
aaccgtaataaccgtctggcccgtctgcaggaaatcctcgccccggaaatcattgtccgc
aacgaaaagcggatgctccaggaagcagtggatgccctgatcgataatggtcgccggggt
cgcaccgtcgtgggtgccaataaccgggcgttgaaatccctttccgacatcattgaaggt
aagcagggtcgtttccgtcaaaacctcttgggtaaacgggtggactactccggtcgttcc
gttattgtggtgggccccaacctcaaaatttaccaatgcggtctgccccgggaaatggcg
atcgagctattccagccctttgtgattcaccgtctgatcaaactaggcattgttaacaac
atcaaagcggccaagaaattgattctcaagggcgatccgcaaatttggagcgtattggag
gaagtgatcactggacaccccgttatgctcaaccgggcacccactctgcaccgtttgggt
atccaagcctttgagccaattttggtggaagggcgagccatccaactccatcccctggtg
tgtcctgcttttaacgctgacttcgacggggaccaaatggctgtacacgtccccctttcc
ctagaggcccaatgtgaagcccggctgttgatgctggcttgccataacgttctttccccc
gctacaggtaaacccattgtggctccctcccaggacatggtattgggctgttattacctc
accgcagaaaatcccaatgcccaaaagggagcaggacgttactttgccgggatcgaagat
gccttgcgggcctatgaccacggccaagtggatctccactcccaaatttggattcgccat
ctggatgaagatgtggtgacggaaaaaccagacacagaggtcatcaaaaccgaggatttg
ggggatggcacggtgatgaaatattaccgggaacggaaaatccgtgaaggagttgatggg
gagattattactcagtacattcagacgactccggggcggatcatttacaacaaaacgatc
gccgaagcgttggtgttctaa
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