Synechocystis sp. IPPAS B-1465: C7I86_12845
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Entry
C7I86_12845 CDS
T05368
Name
(GenBank) RNA polymerase sigma-C factor
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
syo
Synechocystis sp. IPPAS B-1465
Brite
KEGG Orthology (KO) [BR:
syo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
syo03021
]
C7I86_12845
Transcription machinery [BR:
syo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
C7I86_12845
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_28
Sigma70_r4_2
LexA_DNA_bind
Stonustoxin_helical
Motif
Other DBs
NCBI-ProteinID:
AVP90478
LinkDB
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Position
complement(2732401..2733615)
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AA seq
404 aa
AA seq
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MTKPSNDEPPLTNVRDLEAMLPLEEEDLTADSQDLEYTAVAHRQQFSTDLVRLYLQDIGR
IPLLKRDEEVHIAQQVQSYLRLVEIQNRAAESDAAIDQYQTAIAVHDQLLVQLGHRPSYE
RWAKILGQTVATLKQTLKSGKKRWAELAGLTVEELENIEKQGITAKAHMIKANLRLVVSV
AKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYSYWWIRQGITRAIATQSRMI
RLPVHITEKLNKIKRAQRKISQEKGHTPKIDEVAEELGMTPEQVREVLTQVPRSVSLELK
VGQDKDTELMDLLETDTQSPEDELMREALQNDMQEILLDLTPREQEVIALRFGFQDGVAH
SLSEIGRILNLSRERVRQIEAKALQKLRHPRRRDRIRDYYENLG
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atgactaaaccaagcaacgatgagccgccactgactaatgtacgagatttggaagctatg
ttgccgctggaggaagaggatttaacggcagactcccaggatttggaatacaccgctgta
gcccatcgtcagcaatttagtactgatttagtgcgcctttacctccaggatattggtcgc
attcccctgttgaagcgagatgaagaggtgcacatagcccagcaggtgcaaagctatctc
cgcctagtggaaatccaaaatcgggccgcagaatccgatgctgccattgaccaataccaa
acggcgatcgccgtccacgatcaacttttagtccagttgggtcatcgtccttcctatgaa
cgttgggccaaaatcctcgggcaaaccgtagcgacccttaagcaaaccctcaaaagcggt
aaaaaacgatgggcggagttggcggggttgacggtggaagaattagagaatattgaaaag
cagggcattacggccaaagcccacatgatcaaagccaatttaaggctagtggtttccgtc
gccaagaaataccaaaatcggggcttggaacttttagatctgatccaagagggcaccctg
gggttggagcgggcggtggaaaaatttgatcccaccaagggttaccgctttagcacctat
tcctactggtggattcgtcagggcatcaccagggcgatcgccacccagagtcgtatgatt
cgtttgccggtgcacatcaccgagaagttaaataaaatcaaacgagcccagcggaaaatt
tcccaagaaaagggccacactccgaaaattgacgaagtggcggaagaattaggcatgacc
ccggagcaggtgcgggaagtgctgacccaagtgccccgttccgtctccctagaactcaag
gtggggcaggataaggatacggagctaatggatttactggaaaccgacacccagtcgccg
gaggatgaattgatgcgggaggctctccagaatgacatgcaggaaattttgctagatttg
acccccagggaacaggaagtaatcgccctgcgctttggttttcaagacggcgtagcccac
tccctatctgaaattgggcgtattttgaatttatcgagggaaagggtacgacagattgaa
gctaaggctctgcaaaagttgcgccatccccgccgccgggaccgcatccgggactattac
gaaaatttgggttag
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