Synechocystis sp. IPPAS B-1465: C7I86_13575
Help
Entry
C7I86_13575 CDS
T05368
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
syo
Synechocystis sp. IPPAS B-1465
Pathway
syo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C7I86_13575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syo03019
]
C7I86_13575
03009 Ribosome biogenesis [BR:
syo03009
]
C7I86_13575
Enzymes [BR:
syo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C7I86_13575
Messenger RNA biogenesis [BR:
syo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C7I86_13575
Ribosome biogenesis [BR:
syo03009
]
Prokaryotic type
rRNA helicases
C7I86_13575
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
ResIII
CMS1
HEM4
AAA_19
Cas3-like_C_2
Flavi_DEAD
DUF7739
AAA_30
Fe-ADH
Motif
Other DBs
NCBI-ProteinID:
AVP90610
LinkDB
All DBs
Position
2888485..2889963
Genome browser
AA seq
492 aa
AA seq
DB search
MTNTLTSTFADLGLSEKRCQLLADIGFEAPTQIQTEAIPLLLSGRDMLAQSQTGTGKTAA
FALPLMDRIDPEGDLQALILTPTRELAQQVAEAMKDFSHERRLFILNVYGGQSIERQIRS
LERGVQIVVGTPGRVIDLIDRKKLKLETIQWVVLDEADEMLSMGFIDDVKTILRKTPPTR
QTACFSATMPREIKELVNQFLNDPALVTVKQTQSTPTRIEQQLYHVPRGWSKAKALQPIL
EMEDPESAIIFVRTKQTAADLTSRLQEAGHSVDEYHGNLSQSQRERLVHRFRDGKIKLVV
ATDIAARGLDVNNLSHVVNFDLPDNAETYIHRIGRTGRAGKTGKAIALVEPIDRRLLRSI
ENRLKQQIEVCTIPNRSQVEAKRIEKLQEQLKEALTGERMASFLPLVRELSDEYDAQAIA
AAALQMIYDQSCPHWMKSDWEVPEVDFNKPVLRRGRNAGGGQNKSGGGYQGKPGKPRRSS
GGRRPAYSDRQQ
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgactaatactttgactagtaccttcgctgaccttggtctttctgaaaaacgttgtcaa
ctcttggccgacattggctttgaggctcccacccaaattcaaactgaagccattcccctg
cttttgagcggccgggacatgctggcccaatcccaaaccggcacggggaaaaccgccgcc
tttgccctacctttgatggaccgcattgacccagagggggacttgcaagccttaattttg
acccccacccgggaattggcccagcaggtggcggaagcaatgaaggacttttcccacgag
cgccgtctatttattttgaatgtgtacggtggtcaatccatcgagcggcaaattcgcagc
ctagaacggggtgtgcaaattgtggtgggcacccctggacgggtgattgacctaattgac
cgcaaaaaacttaaattagaaaccatccaatgggtggtgctggatgaagcggacgaaatg
ctgagcatgggcttcattgacgatgtgaaaaccattctgcgtaaaactccccccaccagg
cagaccgcttgtttttctgccaccatgccccgggaaatcaaagaattggtcaaccaattt
ttaaatgatcccgccctggtgaccgttaaacagacccaatccacccccacccgcattgag
cagcagctttatcacgtgccccgcggttggtctaaggctaaagcgctacaaccgattctg
gaaatggaagatcccgaatccgccattatttttgttcgtactaaacaaaccgccgcagac
ctcaccagtcgtttgcaagaagcgggccatagcgtggatgagtaccacggcaacctgagc
caatcccaacgggagcgtttggtgcaccgtttccgggatggcaaaattaagctggtggtg
gccacggacatcgccgcccggggtttagatgtgaataacctcagccatgtggtcaacttt
gatttacccgataacgctgaaacctacattcaccgcattggccgcaccggtcgggctggt
aagactggtaaggcgatcgccttggtggaacccattgaccgtcgtttactgcgatccatc
gaaaaccgtctgaaacaacaaattgaagtttgtaccattcctaaccgttcgcaggtggaa
gccaagcggattgaaaaactgcaggaacaactcaaggaagccctgaccggtgagcggatg
gcctccttccttcctttagtgcgggaattgagcgatgagtacgatgcccaggcgatcgcc
gctgctgctttacagatgatctatgaccagagctgtccccattggatgaaatccgattgg
gaagtgccggaagttgatttcaacaagcccgttctccgtcgtggccgcaatgctggcggt
ggccagaacaaaagtgggggtggttaccaaggtaaaccgggcaaaccccgtcgctccagc
ggtggccgtcgtcctgcctatagtgatcgccaacagtaa
DBGET
integrated database retrieval system
