Shewanella youngdeokensis: RGE70_00225
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Entry
RGE70_00225 CDS
T10660
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
syou Shewanella youngdeokensis
Pathway
syou03030
DNA replication
syou03410
Base excision repair
syou03420
Nucleotide excision repair
syou03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
syou00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RGE70_00225 (polA)
03410 Base excision repair
RGE70_00225 (polA)
03420 Nucleotide excision repair
RGE70_00225 (polA)
03440 Homologous recombination
RGE70_00225 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
syou03032
]
RGE70_00225 (polA)
03400 DNA repair and recombination proteins [BR:
syou03400
]
RGE70_00225 (polA)
Enzymes [BR:
syou01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RGE70_00225 (polA)
DNA replication proteins [BR:
syou03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RGE70_00225 (polA)
DNA repair and recombination proteins [BR:
syou03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
RGE70_00225 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RGE70_00225 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
WOT05289
LinkDB
All DBs
Position
complement(52220..54973)
Genome browser
AA seq
917 aa
AA seq
DB search
MPKIADNPLVLVDGSSYLYRAYYSPPHLTNSKGEATGAVYGVINMLRSLLNQYNPSQMAV
VFDAKGKTFRNDMYSEYKAQRPPMPDDLRGQIEPLHRIIKALGLPLVCIPGVEADDVIGT
IATQASKEGRAVLISTGDKDMAQLVDDNITLINTMTNTIMGPAEVTEKFGVGPELIIDLL
ALQGDKADNIPGLPGVGEKTALAMLTGAGGVDKILAAPEKMPELGFRGSKTMPAKIIEHA
DMLKLSYDLATIKLDVELEQEWQSLTIEPANKDELIKCYGEMEFKRWLAEVLDNKPGAST
SSKDTDEAIVKQDIKIEYDTILSTQQLDDWLVKLNNAELIAIDTETTSLNYMTAELVGLS
FAVEAGKAAYLPLAHDYDDAPEQLDKALVLEKLTPILENPAIKKVGQNLKYDISILANAG
ITLRGVQFDTMLESYVFNSVASKHNMDDLALKYLGHKNVSFEDIAGKGAKQVTFNKIPLE
TAAPYAAEDADITLRLHQHLWPRLEKQSELVSVFTDIELPLINILSSIERQGVLIDSMLL
GQQSEELARKIDDLKAKAYEIAGQEFNLASPKQLQELFFEKLGYPIIKKTPKGAPSTAEE
VLIELALDYPLPKIILEHRSLAKLKSTYTDKLPLMADAKTGRVHTSYHQANAATGRLSSS
EPNLQNIPIRTEEGRRIRHAFIAPEGKKILAADYSQIELRIMAHLSQDKGLLTAFAEGKD
IHKATAAEVFDVDFSEVTTDQRRRAKAVNFGLIYGMSAFGLAKQLDIPRGEAQRYIDTYF
ERYPGVLKYMEETRATAADLGYVSTLYGRRLYLPAIKDRNAMRRQAAERAAINAPMQGTA
ADIIKKAMIDVAHWIATETNGEITMIMQVHDELVFEVDAALAETLQAKICQLMAATASLD
VELLAEAGYGDNWEQAH
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atgcctaaaattgccgacaaccctttagttcttgtggatggttcttcatacctttaccgc
gcctattattctcccccacatttgacaaactctaaaggtgaagcaaccggagctgtctac
ggggtgatcaacatgctgcgcagcctgctgaatcaatacaatcctagccaaatggccgtt
gtttttgatgctaaaggcaaaacatttcgaaacgatatgtattcggaatacaaagcgcag
cgcccaccaatgcctgatgacttacgcgggcaaatagagcctctgcacagaatcatcaaa
gcgttaggcttaccactagtgtgtattcctggcgttgaggcagatgatgttatcggtacg
attgcaactcaagccagtaaagaaggtcgtgcggtattaattagtactggcgataaagac
atggctcaattggtagatgataatatcacgctaattaataccatgaccaacacgattatg
gggcctgcagaggtcaccgaaaagtttggagttggcccagagctcattattgaccttctc
gcactgcaaggcgataaagccgacaacataccagggctaccaggtgttggtgaaaaaacg
gcactcgcaatgctaactggtgccgggggagtagataaaatcttagcggcccctgaaaaa
atgcctgaactcggttttcgcggctccaaaaccatgccagctaaaatcattgaacatgct
gatatgctcaagctcagttatgacctagccaccataaagctcgatgttgaacttgaacaa
gaatggcaatcactcacaattgagcctgctaacaaagacgaactcattaaatgctacggc
gaaatggagtttaaacgctggcttgctgaagtgttagacaacaagccaggcgcaagcaca
tcaagtaaagacactgatgaagccattgttaagcaagacatcaaaattgaatacgacact
atcttgtcaacacagcaattagatgactggttagtaaagcttaacaacgcagaattaata
gctatcgacacagagacaaccagcctcaactacatgacagctgagctcgttggactctca
tttgcagtagaagctggcaaagcggcctatttaccattagcgcacgattatgatgatgct
ccagaacaactggacaaagcacttgtactagaaaagctcaccccaatacttgaaaaccca
gcaataaagaaagtgggtcaaaacttaaagtatgacatcagcattttagccaacgcgggg
atcacactgcgtggtgttcaattcgatacgatgcttgaatcatatgtttttaactctgtc
gcctctaagcacaatatggacgacttagcgcttaagtaccttggccataaaaatgtcagt
ttcgaagacattgctggcaaaggcgctaagcaagtcacttttaataagattcctttagaa
acagcagcaccatacgcagctgaagatgccgacattactctacgcttacatcaacatttg
tggcctcgactagaaaaacagtcagaattggtcagtgtatttaccgatatagagctacca
ttgattaatattttgtcgtccattgagcgccaaggtgtactcattgacagcatgctgtta
ggacaacaaagtgaagagttagcaagaaaaattgatgacttaaaagccaaagcctatgag
atagccggacaagaatttaaccttgcttcacccaagcagctacaagagttattttttgaa
aaactaggctaccctattatcaaaaaaacgccaaaaggcgcaccatctactgccgaagaa
gtactgatcgagctagcattagactacccgctgccaaaaatcattcttgaacaccgcagc
ctagcaaagttaaagagtacttatacagataagttaccgttaatggctgatgccaaaacg
ggccgggtgcacaccagctaccaccaagcaaatgctgccacaggtcgcttatcgtccagc
gagcctaacttacagaacataccaattagaacagaagaaggtcgccgcattcgtcatgca
tttatagcacctgaaggcaaaaaaattctcgcggccgattactctcaaatagaactgcga
attatggctcatctatctcaagacaagggcctcttgacagcatttgctgaaggaaaagat
atccataaagccactgcagccgaagtatttgatgtcgatttcagtgaagttaccaccgac
caacgtcgccgtgcaaaagccgttaactttggccttatttacggtatgtctgcattcggg
ttggccaaacaacttgatattcctcgcggcgaagcacagcgctatatcgacacctacttt
gagcgttaccctggtgtattaaaatacatggaagaaactcgtgctacagcagcagatctc
ggttacgtatcaacgctgtatgggcgccgcctgtatttaccagcgattaaagaccgtaat
gctatgcgtcgacaagctgcagagcgagcggcaattaacgcgcctatgcaaggtactgct
gccgatatcatcaaaaaggcaatgattgatgttgctcactggattgcaaccgaaaccaac
ggtgaaataaccatgatcatgcaagtacacgatgaattggtgtttgaagtggatgcggcg
ctagctgaaacgttacaagctaaaatttgtcaattgatggcagcaacagcaagtctggat
gttgaactacttgcagaagctggctacggtgacaactgggaacaagctcactaa
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