Shewanella youngdeokensis: RGE70_01690
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Entry
RGE70_01690 CDS
T10660
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
syou Shewanella youngdeokensis
Pathway
syou03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syou00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RGE70_01690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syou03019
]
RGE70_01690
03009 Ribosome biogenesis [BR:
syou03009
]
RGE70_01690
Enzymes [BR:
syou01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RGE70_01690
Messenger RNA biogenesis [BR:
syou03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RGE70_01690
Ribosome biogenesis [BR:
syou03009
]
Prokaryotic type
rRNA helicases
RGE70_01690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
WOT05567
LinkDB
All DBs
Position
complement(393100..394935)
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AA seq
611 aa
AA seq
DB search
MSSIEKTFRELGLSESLLRALDELGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAF
ALPLLNSIDPSTNLPQILVLAPTRELAVQVAEAFGSYAKFMKGLHVLPIYGGQSMQQQLN
ALRRGPQIIVGTPGRVMDHMRRGTLKLESLKAMVLDEADEMLKMGFIDDIEWILEHTPKQ
RQLALFSATMPEQIKRVANKYLTTPVHVKIATTTTTVETIEQRFVQVSQHNKLEALVRVL
EVEKTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDIII
ATDVAARGLDVERIGHVVNFDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTI
ERATKSRISPMDIPSPETVAERRLSRLGEQVSEVIAKDSLDFMKGAVAKLCQELEVDTDI
LAAALLQQVQKDRPLQLPSIHERQRDSRDDRNSRDRAPRERGDRPRRESRPTAATIGSAD
ALKDNPDVKMCRYIIDVGRDNGVGVGNIVGAVANEANIDSRYIGQIQLFDSVTAIDLPDG
MPKDVLAHLQKVRVCGRPLNIREASAEQFDNLPGGDSRPARRPRRSSGDRRPSGDRRPSG
DRKPHRKGPAE
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccatagaaaaaactttccgcgaactcggtctatccgagtctttgttgcgtgct
cttgatgagctcggttacgaaaaaccaactccaattcaagctgcaagtatcgacccacta
atggccggtaaagatattttaggtcaagcgcaaactggtactggtaaaacaggcgcattt
gcactgcctttacttaacagcattgacccaagcactaacttaccacaaattttggtacta
gctccaacacgtgaactagccgtacaggttgctgaagcattcggtagctacgctaaattc
atgaaaggtttacacgttctgcctatttacggcggacaaagcatgcaacagcaattaaat
gctttgcgtcgtggaccacaaattattgttggtactcctggccgagtaatggaccacatg
cgccgtggcacacttaagctagagtcactaaaagcaatggtgcttgatgaagctgatgaa
atgctaaaaatgggtttcatcgatgatatcgagtggatccttgagcatacacctaagcaa
cgtcaacttgcgcttttctcagcaactatgcctgagcaaattaagcgagtagcgaacaaa
tacttaactacacctgtacacgttaaaattgcaactacaactacaactgtagaaaccatt
gagcaacgttttgtacaagtgtcacagcacaacaaactagaagcacttgtacgtgttcta
gaagtagagaagactgaaggtattatcatcttcgttcgaactcgtaacagttgtgttgag
ctagctgaaaagttagaagcccgtggttacgcttcatcaccactacacggtgatatgaat
caacaagcgcgtgaacgtgccgttgaccagttaaaacgtggcaaacttgatattattatc
gctactgacgtcgcggcccgtggtcttgacgttgagcgtatcggacacgtagttaacttc
gatatcccatatgatacagaagcttacgtacaccgtattggccgtacaggtcgtgctggc
cgtactggtatggcgattcttttcgttacacacagagaaatgcgtatgctacgcactatc
gaacgtgcaactaagagccgtatctcgccaatggacatccctagcccagagactgtggca
gaacgccgtctatctcgcctaggtgagcaagtttcagaagtaattgctaaagattcttta
gacttcatgaaaggcgccgttgctaaattatgtcaagagctagaagttgatactgacatt
cttgctgctgcattattacaacaagttcaaaaagatcgcccactacagttaccgtcaatt
cacgaacgtcaacgtgactcacgtgatgaccgtaactctcgagaccgtgcacctcgtgaa
cgtggtgatcgtccacgcagagaatctcgtccaactgcagcaacaattggttcagcagat
gcacttaaagataatccagatgttaaaatgtgtcgttacatcatcgatgtaggtcgcgac
aatggtgttggtgttggtaatatcgttggtgcagtcgctaacgaagcaaacattgatagc
cgttacattggtcaaatccaattatttgacagcgtaacagccattgatttaccagacgga
atgccaaaagatgtactagcacacctacaaaaagtacgtgtatgcggtcgtccacttaac
atccgtgaagcctctgcagagcagttcgacaacttgcctggtggcgatagccgtccagct
cgtcgtccacgtcgctcttctggtgaccgccgtccttctggcgaccgtcgtccttctggt
gacagaaagccgcatcgcaaaggtcctgctgagtaa
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