Shewanella youngdeokensis: RGE70_02115
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Entry
RGE70_02115 CDS
T10660
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
syou Shewanella youngdeokensis
Pathway
syou03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syou00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RGE70_02115 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syou03019
]
RGE70_02115 (pcnB)
Enzymes [BR:
syou01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
RGE70_02115 (pcnB)
Messenger RNA biogenesis [BR:
syou03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
RGE70_02115 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
WOT06931
LinkDB
All DBs
Position
complement(493915..495312)
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AA seq
465 aa
AA seq
DB search
MFRRISQFCKKLFDDSSKAEESTQAGLSLEVVPRKAHSISRRQISDNAIKVLYRLNRSGF
KAYLVGGGVRDILLGLQPKDFDVVTNATPEEIKKLFRNCRLVGRRFRLAHIVFGRDIIEV
ATLRGHHVDSVETVSKTNESGRLLRDNVYGSIDEDAERRDFTINALYYDISDFSIHSYGG
GLQDLESHTIRLIGDPETRYREDPVRMLRAVRFATKLDMNIEPAAAAPIPTLAALLKDIP
AARMYEEILKLYFAGKASQNYNMMRDLGLFAPLFPLVDAQLNESPHGPIAKLLQEMMENT
DLRVKQDKPVTPAFFYAALLWYPLSQRADDIALESGLSLYDAYTAAMGDVMEQQCRSISI
PRRFSSVTKDIWQLQLRFERNKGTKAFRFIEHPKFRAAYDLLLLRGSAEGGSVAKNAAWW
QSFVEGNEEQRNVIAKSGNKGGRNRNAQRRRRKPSTKAAPAKPVE
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atttttcgccgtattagccaattctgtaaaaagttatttgacgatagttcaaaagctgaa
gaaagtactcaggctggcctgagtttagaagttgtgcctcgaaaagcgcactcgatttct
cgtagacagatcagcgataacgcgatcaaagtcctgtacaggctcaataggtcaggtttt
aaagcctacttagttggcggcggggtgcgtgatattttgctggggcttcaacctaaagat
tttgacgtggtaaccaacgctacccctgaagaaattaaaaaacttttccgtaactgccgc
cttgttggcagacgttttcgtttagcacacattgtttttggccgcgatattatcgaagtc
gcgaccttgcgtggccaccatgttgacagcgtagagaccgtatctaaaacgaacgaatct
ggtcgactgctgcgtgataacgtttacggcagtattgatgaagacgccgaacgtcgtgac
tttaccattaatgctctttattacgatatcagtgatttctctattcatagttatggcggt
ggattacaagatttagaatcgcataccattcgcctaattggggaccctgagactcgctat
cgcgaagatcctgtacgcatgcttcgagcagttcgttttgcgaccaaacttgatatgaac
attgagcctgcagctgcggcgccaattccaactttggccgcgctacttaaagacattcct
gctgcgcgcatgtacgaagaaattctcaagctgtattttgcgggtaaagcctcgcaaaac
tacaatatgatgcgcgatttaggcttatttgctccgttatttccattggtcgatgcccag
ttaaatgaatcgcctcacggacctatcgccaaattattgcaagaaatgatggaaaacacg
gacttgcgcgttaagcaagacaaacccgtaacgcctgcctttttctatgcagcattatta
tggtatccacttagtcaacgagctgatgacattgccctagaaagtggcttaagcctctat
gatgcatacaccgctgcgatgggtgacgtgatggagcaacaatgccgctcaatcagcatt
ccacgccgatttagtagcgtcactaaagacatctggcaacttcaattgcgttttgaacgc
aataaaggcactaaagcatttagatttatcgaacaccctaaatttagagctgcatatgac
ttactgttactacgcggctctgctgagggcggaagtgtggcaaaaaatgcggcatggtgg
cagagctttgttgagggtaatgaagagcaacgtaacgttattgcaaaatcaggcaacaaa
ggcggtcgtaaccgcaatgcacagcgccgtcgccgcaagccttcaaccaaggcagcccca
gctaaacctgtagaataa
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