Shewanella youngdeokensis: RGE70_02595
Help
Entry
RGE70_02595 CDS
T10660
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
syou Shewanella youngdeokensis
Pathway
syou03410
Base excision repair
syou03430
Mismatch repair
syou03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
syou00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RGE70_02595 (recJ)
03430 Mismatch repair
RGE70_02595 (recJ)
03440 Homologous recombination
RGE70_02595 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
syou03400
]
RGE70_02595 (recJ)
DNA repair and recombination proteins [BR:
syou03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
RGE70_02595 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
RGE70_02595 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RGE70_02595 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
WOT05737
UniProt:
A0ABZ0JZJ5
LinkDB
All DBs
Position
618100..619824
Genome browser
AA seq
574 aa
AA seq
DB search
MIHKIVRRAKVDDSHLPDLFSPILKQIYASRGVSADDCELNLGKLLRPNTMLGLGSAAAL
IADAIAAEKSILIMGDFDADGATSTSVCMLALKMMGATKIDYLIPNRFDYGYGLSPEIVA
VAAQKNAEMIITVDNGISSIDGVKAAKALGMTVVITDHHLPGHTLPEADAIVNPNQVGCP
FASKAIAGVGVAFYLMSALRAELRSRNWYQQQGINEPNLGHLLDIVALGTVADVVALDTN
NRILVEAGLQRVKAGRCRVGITALLEVAKRTPSRIVASDFGFAVGPRLNAAGRLDEMALG
VETLLCEDILLARRMASELDSLNAERRDLETEMQQEALKSLEAVELDENELPWGIALFQA
DWHQGVIGILASRIKDKYHRPVIAFADAGSGVLKGSARSIKGLHMRDLLELINSRHPGMI
VKFGGHAMAAGLSIKAGQFAVFAQAYDDAIREVLAPELLTGELVSDGELTPEQLTLDLAT
ELRSAGPWGQSFTEPLFDGHFRIIQQRIVGEKHLKLVLETECGRVMLDAIAFNVDLKTWP
DATIQHAEVVYKLDVNEFRGNHTLQLMIEQIAPM
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
gtgatccataaaattgttcgccgcgccaaagttgacgatagtcatttaccggatctattt
tcgccaattttaaagcagatttatgccagtagaggtgtcagtgctgatgactgtgagctt
aatttaggcaaactactcaggcctaatactatgctcggccttggttcagctgctgcgctg
atagccgatgctattgctgcagaaaagtcgatactgattatgggcgactttgatgccgac
ggtgcgacatcaaccagtgtatgtatgttggctctgaaaatgatgggtgcaactaagatt
gattacttaattccaaatcggtttgattatggctacggcttgagtcccgaaattgttgcc
gtagcagcgcaaaaaaatgccgagatgattattaccgtcgataacggcatttcatcaatt
gatggggtaaaagccgctaaagcgctaggaatgaccgtggtgatcaccgaccatcactta
cctggccacactttgccagaggccgatgcgatagtgaaccctaatcaagtaggttgcccg
ttcgccagcaaagctattgcaggtgttggcgttgcattttacttgatgtcggcactcagg
gctgagcttcgctcgcgcaattggtatcagcaacaaggcattaatgagcctaacctaggg
cacttattagacattgttgcattaggcacagtagccgatgtcgtggcattagataccaat
aaccgtattttagttgaagcaggcttgcagcgtgttaaagctggtcgatgccgagtgggg
atcaccgcgctgttagaggtagccaaacgaacgccgtcgcgtattgttgcctccgatttt
ggttttgctgttgggccaaggctgaacgctgctggccgacttgatgaaatggcattaggg
gttgaaaccctattgtgtgaagacatcctgcttgccagaagaatggcctctgaacttgat
agtttaaatgctgagcgccgtgatttagaaactgagatgcagcaagaagctcttaaaagt
cttgaagcagtggagttagatgaaaacgaattaccgtggggcatcgccttgtttcaagct
gactggcatcaaggtgtaataggcattttggcttcacgtataaaagataagtatcaccgc
cccgtaattgcgtttgccgatgccggaagtggtgtactaaaagggtcagcccgctctatt
aaaggtttgcatatgcgtgatctactggagctaattaacagtcgccacccagggatgatt
gttaaatttggtggccacgctatggctgctgggctatcgattaaagcgggccagtttgcg
gtatttgcccaagcttatgacgacgctatacgggaagtgttagcgcctgaactattaacc
ggtgagctggtgtctgatggcgagttaacgcccgagcagttaaccttagacctagccacc
gagttacggagcgcaggcccatgggggcagtcgtttacagagcctttatttgacggccac
tttagaattattcagcaacgcattgttggcgaaaagcaccttaaactggtgctggaaaca
gagtgtggccgggtgatgcttgatgcaattgcatttaatgtagacctaaaaacgtggcct
gatgcaactattcagcatgccgaagtggtgtataaactggatgtgaatgagtttaggggc
aatcatacgttgcagctaatgatagagcagatagctccaatgtag
DBGET
integrated database retrieval system
