Shewanella youngdeokensis: RGE70_02670
Help
Entry
RGE70_02670 CDS
T10660
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
syou Shewanella youngdeokensis
Pathway
syou03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syou00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RGE70_02670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syou03019
]
RGE70_02670
Enzymes [BR:
syou01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RGE70_02670
Messenger RNA biogenesis [BR:
syou03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RGE70_02670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_19
UvrD-helicase
UTP25_NTPase-like
SecA_DEAD
Gag_p24
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WOT05751
LinkDB
All DBs
Position
complement(633499..634797)
Genome browser
AA seq
432 aa
AA seq
DB search
MRFESFSFAPEILRAISECGYQKMTPIQQQAIPAVRRGQDVLASAQTGTGKTAAFALPIL
QKMLDNPSETQRSNARALILTPTRELASQIADNINDYAKYLNVNVVTIFGGVKMDSQATK
LKRGADIIIATPGRLLEHITACNLSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNSQR
QNLMFSATFSAPVKKLASEMMVKPNIITADKQNTTADTVSQVVYPVEQRRKRELLSELIG
KKNWQQVLVFTATRDAADKLEKELNLDGIPTAVVHGEKAQGSRRRALREFKAGKIRVMVA
TEVAARGLDIQGLEYVVNYDLPFLAEDYVHRIGRTGRAGNTGVAISFVSREEERTLADIE
KLIGQKIRRVTIPGYEVGSRDLLIKQLQTRRSFAKRQQRSDNAGAQVIAEKNMQGRRVKV
KNASPAKIKKIK
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgagattcgaatcttttagttttgctcccgagattttgcgcgccatctctgaatgtggt
tatcaaaaaatgacacctattcagcagcaagccattccagcagtgcgccgcggccaagat
gtattagctagcgcccaaactggtaccggtaagaccgctgcatttgcgctacctattttg
caaaaaatgttagataacccgagcgaaactcagcgctcaaacgcacgtgcgcttatttta
acgccaacacgtgagctagcatcgcaaattgcagataacataaatgactatgccaaatac
ttaaacgtcaatgtcgtgactattttcggcggcgtaaaaatggacagccaagcgacaaag
cttaagcgcggcgcagacatcatcatcgccactccgggccgcctacttgagcacatcacc
gcatgtaacttgagcttgtcgaatgtcgactttttagtgcttgatgaagctgaccgtatg
ttagacatgggttttagtgccgatattcaaaaaatacttcaagcagtaaatagtcaacgt
caaaacttgatgttttctgcgaccttctcagccccagttaaaaagcttgctagcgaaatg
atggtcaaacccaatatcattaccgcagacaaacaaaacaccactgcagataccgtaagc
caagtggtttatccggtagagcaacgccgtaaacgcgagttattatcagaactcatcggt
aagaaaaactggcaacaagtgttggtatttaccgccacacgtgacgctgccgacaagctt
gaaaaagagcttaaccttgacggtattccaaccgcagtggttcacggcgaaaaagcacaa
ggcagccgacgccgtgcactacgtgaatttaaagccggtaaaatccgcgtgatggttgca
acagaagttgctgctcgcggactggatattcagggcctagaatacgtggttaactatgat
ttacctttcttggctgaagattatgtgcaccgtattggccgcacaggccgtgcaggtaac
accggtgttgctatctcatttgtcagtcgcgaagaagaacgcacattagcagacatcgaa
aagctgattggccaaaaaattcgtcgagtgacgattcctggctacgaagttggcagtcgc
gacctgttaatcaaacagctacaaacccgtcgtagctttgcgaaaaggcaacaacgttca
gacaatgctggcgcgcaagtcattgcagagaaaaacatgcaaggccgccgcgttaaagta
aaaaatgcatcaccggctaaaatcaaaaaaatcaaatag
DBGET
integrated database retrieval system
