Shewanella youngdeokensis: RGE70_04145
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Entry
RGE70_04145 CDS
T10660
Symbol
truB
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
syou Shewanella youngdeokensis
Brite
KEGG Orthology (KO) [BR:
syou00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
syou03016
]
RGE70_04145 (truB)
Enzymes [BR:
syou01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
RGE70_04145 (truB)
Transfer RNA biogenesis [BR:
syou03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
RGE70_04145 (truB)
Prokaryotic type
RGE70_04145 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Motif
Other DBs
NCBI-ProteinID:
WOT06010
LinkDB
All DBs
Position
956484..957431
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AA seq
315 aa
AA seq
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MARRSRGRHIDGVLLLDKDTGMSSNFALQRVKRFFNANKAGHTGALDPLATGMLPICLGE
ATKFSQHLLDADKRYLVTAKLGQRTDTSDSDGEVVQTREINFTQEQLDAALEHFRGKTMQ
VPSMFSALKYQGQPLYKYAREGIEVPREARPINVFELNFISLEGDELTLDIHCSKGTYIR
TITDDLGEMLGCGAHVVMLRRTQVAGYPYDNMVSLAQLEALVAKAEEESLTLSEVLDPLL
LPMDTAVSDFKEINLSDDLAPFLMNGNPVQVANLPVDELVRITLGDEHKFVGIGQMNDDG
LLAPKRLIVLRAESE
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atggctcgccgttctcgtggtcgccatattgatggcgtattattgcttgataaagataca
ggcatgagctctaattttgcattacaaagagttaaacgcttttttaatgcaaataaagcg
ggccatactggtgcacttgatccattagcaacgggtatgctgcctatttgtttaggcgaa
gcaacaaagttttcccagcatctgcttgatgctgataaacgctatttagtgacagctaag
cttggtcagcgtactgataccagtgactccgatggcgaagtcgttcaaacgcgtgaaatt
aattttactcaagagcagcttgatgcggcgcttgagcattttcgtggtaaaacgatgcaa
gtcccttcaatgttttcagcgcttaaataccaaggtcagcctttgtataaatatgcgcgt
gaaggtattgaagtaccgcgcgaggcacgccctatcaatgtctttgaacttaattttatc
agcctagaaggtgatgagttaacactggatattcattgctctaaaggcacctacatacgc
acaatcactgatgacttaggtgaaatgcttggttgtggcgcacatgtagtgatgttacgc
cgcacacaagtagctggttacccatatgacaatatggtatcacttgcccaacttgaagca
ttggttgctaaagctgaagaggagtcgttaactttatctgaagtacttgatcctctgtta
ttgcctatggatactgcggtcagtgattttaaggaaattaacctatcagatgatttggct
ccattcttaatgaatggcaacccagtccaggtagctaatttgcccgttgatgaacttgta
aggatcaccttaggtgacgagcataagtttgttggtattggccaaatgaatgatgatgga
ttgctggcgccaaaacgacttattgtgttaagagcagagtctgaatag
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