Shewanella youngdeokensis: RGE70_05450
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Entry
RGE70_05450 CDS
T10660
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K10941
sigma-54 dependent transcriptional regulator, flagellar regulatory protein
Organism
syou Shewanella youngdeokensis
Pathway
syou02020
Two-component system
syou02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
syou00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
RGE70_05450
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RGE70_05450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
syou03000
]
RGE70_05450
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
syou02035
]
RGE70_05450
Transcription factors [BR:
syou03000
]
Prokaryotic type
Helix-turn-helix
Other families
RGE70_05450
Bacterial motility proteins [BR:
syou02035
]
Flagellar system
Flagellar assembly proteins
Others
RGE70_05450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
FleQ
Sigma54_activ_2
HTH_8
AAA_5
AAA_16
HTH_50
Mg_chelatase
AAA
bpMoxR
AAA_7
AAA_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
WOT06246
LinkDB
All DBs
Position
1285847..1287280
Genome browser
AA seq
477 aa
AA seq
DB search
MMQTDQRILLVGNPSERINRLLCVFEFLGEQVELVGFDKLELHTAKTRFRSIVLPTETQS
KELIQSLASALPWQPFLLLGEQLDIKMSNILGCVEEPLNYPQLTEMLHFCQVFGQVKRPE
VPTSANQTKLFRSLVGRSQGVANVRHLINQVASSEATVLILGQSGTGKEVVARNIHYISD
RSSGPFIPVNCGAIPAELLESELFGHEKGSFTGAISARKGRFELAEKGTLFLDEIGDMPL
QMQVKLLRVLQEKVFERVGGTKSISTDVRVVAATHRDLESMIEAGDFREDLYYRLNVFPI
EMPALCERKEDIPLLLQELISRVYNEGRGRVRFTQRAIESLKEHAWSGNVRELSNLVERL
TILYPGGLVDVNDLPLKYRHIDVPEYCVEISEEQQERDAFASLFSDEEPIDIPETRFPSE
LPPEGVNLKDLLAELEIDMIRQALDKQDNVVARAAEMLGIRRTTLVEKMRKYGLGKD
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgatgcagacagatcaacgaattctactagtcggtaacccgtcggagcgaatcaatcgc
ttgttatgtgtatttgagtttttaggtgagcaggttgagttggtcggtttcgataaactt
gagttgcacacggcgaaaactcgatttcgctcgattgtgttacctactgaaacccaatca
aaagaacttattcagtctttagctagtgcgcttccttggcagccttttttgctgcttggc
gaacagcttgatattaaaatgtcgaatattcttggttgtgttgaagaaccactaaactac
cctcaattaactgaaatgttgcacttttgccaagtgttcggtcaagttaagcgtccagaa
gtgcctacgagtgctaaccaaaccaaactgtttcgtagtcttgttggccgcagtcagggg
gtggccaatgtccgtcaccttattaaccaggttgccagttctgaagcaacggtgttaatt
ctcggccaatcaggtacgggtaaagaggtggttgctcgcaatatccattatatttctgat
cgcagtagcggaccttttattccggttaactgtggcgcgattccggcagaattattagaa
agtgaattgtttggccatgaaaaaggctcctttaccggagcgataagtgcgcgtaaaggt
cggttcgaattagcagaaaagggcaccttgtttcttgatgaaataggcgatatgccacta
caaatgcaagttaaactgctgcgtgttttgcaagaaaaagtgttcgaacgcgtgggtggc
actaagtcaatatcaacagatgtacgggtggtggctgcaacgcaccgtgatcttgaaagt
atgattgaagccggcgatttcagagaagatctatattatcgtctgaatgtgtttcctatt
gaaatgcccgctttgtgtgaacgcaaagaagatattccattattattacaagaattgatc
agccgtgtttacaacgaaggccgtggccgcgtgcgctttacgcaacgggcaatcgaatcg
ctcaaagagcatgcatggtcaggtaatgtgcgtgagctgtctaacttagttgaacgctta
acgattttatatccaggcgggctggtcgatgtgaacgacctaccgttaaagtaccgccat
attgatgtgcctgaatattgtgttgaaatcagtgaagagcaacaagagcgtgacgctttt
gcgtcattgttcagtgatgaagaaccgatagacatccctgagacgcgttttccaagtgag
ttaccgccagaaggggttaacttaaaagatttgctggcagagcttgaaattgacatgatc
aggcaagcactcgataagcaagataatgtggtagcgcgtgcggctgaaatgcttggcatt
cgccggacgactttggttgaaaaaatgcgtaaatatggtttaggcaaagactaa
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