Shewanella youngdeokensis: RGE70_05680
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Entry
RGE70_05680 CDS
T10660
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
syou Shewanella youngdeokensis
Pathway
syou00521
Streptomycin biosynthesis
syou00523
Polyketide sugar unit biosynthesis
syou00525
Acarbose and validamycin biosynthesis
syou00541
Biosynthesis of various nucleotide sugars
syou01100
Metabolic pathways
syou01110
Biosynthesis of secondary metabolites
syou01250
Biosynthesis of nucleotide sugars
Module
syou_M00793
dTDP-L-rhamnose biosynthesis, glucose-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
syou00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
RGE70_05680 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
RGE70_05680 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
RGE70_05680 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
RGE70_05680 (rfbB)
00525 Acarbose and validamycin biosynthesis
RGE70_05680 (rfbB)
Enzymes [BR:
syou01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
RGE70_05680 (rfbB)
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GFIT
Motif
Pfam:
GDP_Man_Dehyd
Epimerase
Polysacc_synt_2
3Beta_HSD
NAD_binding_4
RmlD_sub_bind
adh_short
NmrA
Motif
Other DBs
NCBI-ProteinID:
WOT06289
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All DBs
Position
1334433..1335530
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AA seq
365 aa
AA seq
DB search
MNNKKILVTGGAGFIGANFVHYWLNNNPNDTVVVLDALTYAGNIANLDPVIDNPNFTFVQ
GNICDTELVELLLNEHSITTIVHFAAESHVDRSITGPDAFIETNILGTYSLLKAAKKIWI
EQPTLKGEPIVDHRFHHVSTDEVYGTLSATDPAFTEDTAYAPNSPYSASKAASDHLVRAY
HHTYGLQVTTSNCSNNYGPYHFPEKLIPLIVTNILSDKPLPVYGDGQQIRDWLYVEDHAR
GIELVLKQGRVGENYNIGGNNEWANIDIVKLICNKMNAKFANSRELTTQFPQATSVIAGC
AEQLITFVEDRAGHDKRYAIDADKSNTELGYVPIQNFESGFEKTLDWFLDNSGWWQSILD
GSYQK
NT seq
1098 nt
NT seq
+upstream
nt +downstream
nt
atgaataataaaaaaatattagtgacaggtggtgccggttttattggggctaattttgtt
cattactggttaaacaataatcctaacgatacagtggttgtattagatgcactaacttat
gcaggtaatatagcaaatcttgacccagtaattgataaccctaattttacttttgttcag
ggtaatatttgtgatacggagttagttgaactgttattaaatgagcattcaattactacc
atagtacattttgcagctgagtctcatgttgaccgctcgattaccggtcctgatgcattt
atcgagaccaatattttaggtacttacagcctgcttaaagcagcaaaaaaaatatggatt
gaacaacctacattaaaaggcgaaccaatcgttgaccatcgttttcaccatgtcagtacg
gacgaagtatatggtacgttaagtgcgacagatccggcatttacagaagacactgcttat
gcgcccaattcgccgtactcagccagtaaggctgcatcggaccatttagtacgcgcttat
catcacacttatggtttacaggtgacgacttctaattgttcgaacaattatggaccgtat
cattttcccgagaaattgatcccacttattgtcaccaatatccttagtgacaagccgcta
cctgtatatggtgatggtcaacagatccgtgattggttatatgtagaagaccatgcccgt
ggcatagagctagtcttgaaacaagggcgcgtaggcgaaaattataatattggtggtaat
aacgaatgggccaatatagacattgttaagcttatttgtaataaaatgaatgctaagttt
gctaattcacgggaactcacaactcagtttccacaagcaacgtcagtgatcgctggttgt
gctgagcagctaataacctttgtcgaagaccgcgcaggtcatgacaaacgctacgctatc
gatgctgacaaatctaatactgaacttggctatgtaccaattcaaaattttgaatccggt
tttgaaaagaccttagattggtttcttgataatagtggttggtggcaatcaattttagat
ggtagttaccagaaataa
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