Shewanella youngdeokensis: RGE70_06295
Help
Entry
RGE70_06295 CDS
T10660
Name
(GenBank) AlkA N-terminal domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
syou Shewanella youngdeokensis
Pathway
syou03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
syou00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RGE70_06295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
syou03000
]
RGE70_06295
03400 DNA repair and recombination proteins [BR:
syou03400
]
RGE70_06295
Enzymes [BR:
syou01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
RGE70_06295
Transcription factors [BR:
syou03000
]
Prokaryotic type
Helix-turn-helix
AraC family
RGE70_06295
DNA repair and recombination proteins [BR:
syou03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RGE70_06295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ada_Zn_binding
AlkA_N
HTH_18
HTH_AraC
HhH-GPD
Motif
Other DBs
NCBI-ProteinID:
WOT06377
UniProt:
A0ABZ0K1F1
LinkDB
All DBs
Position
1479003..1480523
Genome browser
AA seq
506 aa
AA seq
DB search
MLTHNCMLDSEICHKARLARDARFDGLFFTGVITTGIFCRSICPAVSPKEHNVRYFDSPL
QATMAGLRPCLRCRPDSAPGSFAWKGVGATLERAIGLIDGGVLNGPDAISIEQLSVRLGV
SSRYLRKLFLEGVGTSIKQYTQFRQLMFAKQLLHQTELSITQVGLAAGFNSVRRFNEVFK
QVLKLTPSMFRQQVAVKQLSDNMPIANRELASAVIQPVTLNVELYYRPPLAWQQQHDFYQ
LRAVRYMEWLDGPNHYGRSFSLNGVNGYFDAEHHQARNSFKVNVALEDERGLVELHNIIN
NIKRVLDLNANMQAVEQVLLSLAPLQNHIITGLRLPGTWSTFEAGCRAVLGQQVSIVQAT
KLLNQLVLAYGEPRTIAGKRVLLFPHPTVVAQASLSELKMPGARKLALNALGAFVANNPN
ADLAKWLSIKGIGPWTVSYAQMRGARQPDVLLCGDLVVKKRVIKLYQNTDASKAELAIDY
SALTKEIADTVSPWGSYLTFQLWNLQ
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgctcactcataactgtatgctggacagtgagatttgccataaggcacgattggcacgt
gatgctaggtttgatggattattttttaccggtgtcatcaccacaggcatattttgtcgc
agtatttgtcccgctgtaagcccgaaagagcacaatgtgcgctactttgattcgccctta
caagcaacaatggcgggtttacggccttgtttacgctgtcgtcccgatagcgcgccggga
tcatttgcttggaaaggcgttggcgcaaccctagaaagggctatcggattaatcgatggt
ggtgtgcttaatggtccggatgccatcagtattgagcaattatcagtgcgactgggagta
agtagtcgctatcttcgaaagctatttctagagggggttggcacctctattaagcaatat
acacagttccgacagttgatgtttgctaagcaactactacatcaaacagagttaagtatt
acacaagtgggactcgctgctggctttaacagtgttcgccgttttaatgaagtgtttaag
caggtgttaaagttaacgccgtctatgtttagacagcaagtcgcagttaagcaattaagt
gacaacatgccaatcgcgaaccgtgaacttgcgtcagcagtaatccagccggtgacttta
aacgtagagctttattatcgcccccctttggcttggcaacaacagcatgatttctatcaa
cttagagctgtgaggtatatggaatggttagacggtccaaatcactacggacgcagcttt
agtcttaatggagtgaatgggtactttgatgctgaacatcaccaagcgcgcaacagtttt
aaagtcaatgtggctcttgaagacgagcgaggcttggttgaattacacaacatcattaat
aatattaaaagagtgttggatctgaatgccaatatgcaggccgtagagcaagtattgttg
tcactcgctcccttacaaaaccacataattacagggttaaggttacctggcacgtggtca
acatttgaagccggttgcagagcggttttagggcagcaagttagtattgtacaagctaca
aaattattgaatcagttagtgctcgcctacggtgaaccccgtactattgccggaaaacgt
gtattactatttccccacccgacagtggttgcacaagccagtttgagtgagcttaaaatg
ccaggtgctagaaagttagcgcttaatgcgttaggcgcatttgttgcaaacaatcctaat
gccgatctagcaaagtggctttctattaaaggaataggcccttggacggtatcctatgca
cagatgcggggggcgaggcaacctgacgtgttattgtgtggtgatttagtggtaaaaaaa
cgtgttataaaactatatcaaaatacagatgcttcaaaggctgaacttgccattgattat
agtgcgctgacgaaagagatcgctgatactgtaagcccttggggcagctacttaactttt
cagttgtggaatttacaatga
DBGET
integrated database retrieval system
