Shewanella youngdeokensis: RGE70_06595
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Entry
RGE70_06595 CDS
T10660
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
syou Shewanella youngdeokensis
Brite
KEGG Orthology (KO) [BR:
syou00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
syou03032
]
RGE70_06595 (topA)
03400 DNA repair and recombination proteins [BR:
syou03400
]
RGE70_06595 (topA)
Enzymes [BR:
syou01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
RGE70_06595 (topA)
DNA replication proteins [BR:
syou03032
]
Prokaryotic type
DNA Topoisomerases
RGE70_06595 (topA)
DNA repair and recombination proteins [BR:
syou03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RGE70_06595 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
WOT06435
LinkDB
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Position
1543430..1546159
Genome browser
AA seq
909 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKDFIVKSSVGHIRDLPTSSSSDAKVVSKTPAEVKKMSP
EEKAKYKALKAKQALVARMGVDPDKGWKARYQTLPGKEKVVKDLQTLAESADHIYLATDL
DREGEAIAWHLQEVIGGDESRYQRVVFNEITKSAIQDAFSKPSALDTNMVNAQQARRFLD
RVVGFMASPLLWKKVARGLSAGRVQSVAVRLVVERESEIKAFVPEEFWDVHAQLSTSTDD
RLKMQVVKYQDKAFSPVNQSQADSAVDALSQSSFVVSAREDRATQSKPSAPYITSTLQQA
ASTRLGFGVKKTMMMAQRLYEAGHITYMRTDSTNLSQEALDNVREMIGKEFGDKYLPEAP
IRYGSKEGAQEAHEAIRPSNVKVTAVSLSDMERDAQRLYELIWRQFVSCQMVPAKYDATR
LTVKAGDYELKATGRTLRFDGWTRVQTAIKKKNEEDNTLPVVAKGDVIKLQELLPKQHFT
KPAARYSEASLVKELEKRGIGRPSTYATIISTIQDRGYVKVDNRRFFAEKMGEIVSDRLV
GSFEDLMSYDFTASMEQTLDDVAQGKLDWKKVLDGFYKDFTKQLQHAELPPEEGGMRPNE
MVLTDIKCPTCERPMGIRTGSTGVFLGCSGYALPPKERCKTTMNLTAGEEAISENGEDAE
TDALRAKHRCSICGTAMDSYLIDETRKLHICGNNPTCEGFEVEAGQFKIKGYEGPIIECD
RCENDMELKNGRFGKYFGCTNSECKNTRKLLKNGEAAPPKEDPIHLPELKCTKSDAYFVL
RDGAAGIFLAASNFPKSRETRGPLVEELVKYRDLLWPKYAYLADAPVADDDGNLASVRFS
RKTKEQYVATDVDGKATGWNAKFIDGKWVAEAKAKAKPKAKAKAKPKAKPKAKAKPKAKA
EPKTKPAAK
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcgctagtaatcgtcgaatcaccggccaaagccaagactattaataaatat
ctaggcaaagatttcattgttaagtcgagtgttggtcacatccgtgatctgcctacatca
tcgagttcagatgctaaagtcgtgagtaaaactcctgctgaagttaagaagatgtctcca
gaggagaaggcaaaatacaaggctttaaaagcgaagcaagctcttgttgctcgtatgggg
gttgacccagataagggctggaaagcacgctaccagacccttccaggtaaagaaaaagtc
gttaaagatttacaaaccctcgcagagtctgccgaccacatctatctcgcaaccgatttg
gatagagagggagaagctattgcatggcaccttcaagaagttattgggggagatgaatct
cgctatcaacgcgttgtgtttaatgagatcacgaaatctgccattcaagatgcatttagt
aaaccatcggcacttgataccaatatggttaacgcacaacaggcgcgtcgctttttagat
cgtgttgttggctttatggcatcacctttgctttggaaaaaagtcgcacgtggtttatct
gcaggtcgagttcaatcagttgcagtaagattggtggttgaacgcgaaagcgaaattaaa
gcatttgttccagaagagttttgggatgtgcacgctcaactgtcaacgtcgacagatgac
cgtctgaaaatgcaagtggtaaaataccaagataaagcatttagccctgttaaccagtca
caagcagatagcgcagtggatgcattgtcgcagtcaagttttgtggttagcgccagagaa
gaccgtgcaacacaaagcaaaccgtcggcaccgtacattacatcaacgctgcaacaagcg
gcgagtactcgcttaggttttggtgttaaaaagaccatgatgatggcgcagcgcttatat
gaagctggccacattacttatatgcgtaccgattcaactaacttaagccaagaagcgctc
gataatgtgcgtgaaatgattggcaaagagtttggtgacaagtatttacctgaagcccca
attcgctatggcagcaaagaaggtgcacaagaggctcacgaagcgattcgtccatcgaat
gtaaaagtgactgcagtatcgttgagtgacatggaacgtgatgctcagcgcttgtatgag
ctaatttggcgtcaatttgtatcttgtcagatggtacctgctaagtatgacgcaacacgt
cttactgttaaagcgggtgattacgagttaaaagctactggtcgcacattgcgatttgac
ggttggactcgcgtacaaacagcgattaagaaaaagaacgaagaagacaatacattacct
gtagttgcaaaaggtgatgtgattaagctgcaagagttactgccgaaacagcattttacc
aaacctgcagcgcgttatagcgaagcttcattagttaaagagctagaaaagcgcggtatt
ggacgtccgtcaacttacgcgacaattatttcgacgattcaagaccgtggttatgtaaaa
gtcgataatcgtcgtttctttgctgaaaaaatgggcgagattgttagcgaccgactagtc
ggaagtttcgaagacttgatgagctatgatttcaccgcaagcatggagcaaacgttagat
gacgtagctcaaggtaaacttgactggaaaaaagtactcgacggtttttataaagacttt
accaagcagttacagcacgcagagttaccaccagaagaaggtggtatgcgccctaacgaa
atggtacttacagatattaagtgtccgacctgtgagcgcccaatgggtattcgcaccggt
tcaacaggagtattccttggttgttctggttacgcacttcctcctaaagagcgttgcaaa
acaacgatgaacttaacggctggtgaagaggcgataagtgaaaatggtgaggatgcagaa
actgatgcattaagagcaaagcatcgctgtagcatttgtggtacagcaatggatagctac
cttatcgatgaaactcgtaaattacacatctgtggtaataacccgacgtgtgaaggtttt
gaagtcgaagcagggcagtttaagatcaaaggctatgaagggccaattattgagtgcgat
cgttgtgaaaacgatatggaacttaaaaatggtcgttttggtaagtattttgggtgtacg
aactcagagtgcaaaaatacccgtaaactgctaaaaaatggtgaggcggcgccaccaaaa
gaagacccaattcatttgcctgaacttaaatgtaccaaatcagatgcatattttgtttta
agagatggcgctgcagggatcttccttgctgctagtaacttccctaaatcgcgtgaaaca
cgtggcccgttagtggaagaactagttaagtatagagatttgttatggcctaagtatgct
taccttgcagatgcccctgttgcagatgatgatggtaatttggcgtcagtgcgctttagt
cgaaagactaaagagcaatatgttgcgacggacgttgacggcaaagccaccggttggaat
gccaagtttattgatggtaagtgggttgcagaagcgaaggctaaagccaagccaaaagct
aaagctaaagccaagccaaaagctaagccaaaggctaaagctaagcccaaagcaaaggca
gaacctaaaactaaaccagccgcaaaatag
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