Shewanella youngdeokensis: RGE70_07310
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Entry
RGE70_07310 CDS
T10660
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
syou Shewanella youngdeokensis
Pathway
syou03018
RNA degradation
Brite
Enzymes [BR:
syou01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RGE70_07310 (rne)
Messenger RNA biogenesis [BR:
syou03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RGE70_07310 (rne)
Ribosome biogenesis [BR:
syou03009
]
Prokaryotic type
rRNA processing factors
RGE70_07310 (rne)
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WOT06559
LinkDB
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Position
complement(1699372..1702779)
Genome browser
AA seq
1135 aa
AA seq
DB search
MKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDY
GADRHGFLPLKEIAREYFPKGYSFQGRPNIKEVVKEGQEVIIQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKAALSELDVPQGMGLIVRTAGVGKDPAEL
KWDLKVLQHHWAAIKEAAESAPAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIYEEA
KEHVSLVRPDFVERIKRYDAEVPLFTHYQIETQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEK
RMQDAVHHDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGTESLAL
SILRLMEEEAIKENTLQIEAIVPVDVAAFLLNEKRKAIRITEQRHNVEVYVIPDPNMTTP
DYRVVRHRKDDQISESSYKLLEQEETKLYEPRKLERAAPPKPALKGFATPKSAAPTESKP
VAAKASEPGLFAKIAAAISSLFSSSEEAKTETKQPEKTNRNSQTRNNARRNNPRRNESRR
NRNEGRNDKEQTGDKRTKNTRNDADTRSKQDDKRQQRVEKPSKQAKTNTEAAEPKQEAAR
ERRQRRNMRRKVRVNNEKNETKATAANAEVVEQTKKSVEDKPARPKRKPRAKVESVETTD
NTAVVETNTAVTAEATQTAEVSTPKEDKSREPREGQRRSRRSPRHLRAAGQRRRRDEEQP
TDGNSSEPAAFTPNAPYEPTEQVQSVEVAATTVSEPKIDTPTVEVKAETETTQTAPVKGK
ANSMASSSAMNTSPVYKPAAETKPVVEAKPAAEAKPVVEAKPAVEAKPAVEAKPVVEAKP
AVEAKPAVEAKPVVEAKPAVEAKPVVEAKPVVEAKPAVEAKPAVEAKPAVEAKPAVEAKP
AVEAKPVVEAKPVVEAKPVVEAKPVVEAKPVVEAKPVVEAKPVVKAKPVVEAKPVVEAKP
AVEAKPAVEAKPAVEAKPAVAAKAASAPMAKPAAIKPAETKEAEVVAKPVTTQTKPAAKP
ASRFGSMVMSETTKPVVNARESIATPTGRQYEASEQSDEVKSRVANSANSDMSRT
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgttaatcaatgcaactcaatctgaagagttgcgcgtagccctagttgat
gggcaacaattatatgatctagatatagaaagcccaggtcacgaacaaaagaaagccaat
atctataaagggacgattactcgtgtagagccgtctttagaagcagcttttgttgactac
ggagctgatcgccatggcttcctgcctttaaaagaaattgctcgcgaatatttccctaaa
ggttactctttccaaggccgccctaacattaaggaagtggttaaggaaggacaagaagtc
atcatccaaattgataaagaagagcgcggtaataaaggcgcagctctaacaacctttatc
agtcttgctggttcttacttagtattaatgccaaataacccacgtgcgggcggtatttct
cgccgtattgagggtgacgaacgtactgagcttaaagccgcactttctgaacttgatgtt
ccacaaggtatgggccttattgtccgtacagccggtgttggtaaagaccctgctgaatta
aaatgggatcttaaagtattacaacatcactgggctgcaattaaagaagcagctgagagc
gcacctgcaccgttcttaatccatcaggaaagtaacgttattgtacgtgcgatccgtgat
tacttgcgtcgtgatgtaggcgaaatattaatcgaccacccacgtatttatgaagaagct
aaagagcatgtatcattagtacgtcctgactttgtcgagcgtattaaacgttacgatgct
gaagtaccactatttacacactaccaaattgaaacgcaaattgagtcagcgttccaacgt
gaagtgcgtttaccgtctggtggttcaattgttatcgatccaacagaagcattaacctct
attgatattaactccgctcgcgctacaaaaggcggtgatattgaagagacagcactaaat
actaacttagaagcagcagatgaaattgcacgtcaattacgtctacgtgatttaggtggt
ttagtcgttatcgatttcatcgatatgacacctgtacgccatcaacgtgaagttgaaaag
cgtatgcaagacgccgtacatcacgacagagcacgtgttcagttaggtcgcatttctcgc
tttggtttgatggaaatgtcacgtcaacgtttacgcccttctttagaagaatctgccgcg
catctttgtccacgctgtcacggccaaggcaccattcgtggtaccgagtcattagcacta
tcaatcttacgtttaatggaagaagaagccattaaagagaacacattgcaaattgaagcg
attgtgccggttgatgttgcagcgttcctgttgaacgaaaagcgcaaagctattcgaatc
accgaacaacgccacaatgttgaagtgtatgtgatcccagatccaaacatgaccactcca
gactaccgcgtagtgcgtcatcgcaaagatgatcaaatcagtgagtctagctataagctg
cttgagcaagaagagactaagctatacgaacctcgtaaacttgaaagagctgcgccgcca
aaaccggcactaaaaggctttgcaactcctaaatccgcagcaccaacagaaagcaaacct
gtagcagcaaaagcatctgaacctgggttatttgcaaaaattgcagcggcaattagctca
ctatttagcagtagtgaagaagctaaaacagagactaaacagccagagaagactaaccgt
aacagtcaaactcgtaataatgcacgtcgtaataacccacgccgtaatgagtctcgtcgc
aaccgcaatgaaggtcgtaacgataaagaacaaactggcgacaagcgtactaaaaacact
cgcaatgacgctgatacacgttcaaaacaagacgacaaacgccaacaacgtgtagaaaag
ccaagcaagcaggctaaaacaaacactgaggccgcagagccgaagcaggaagctgcacgt
gaacgtcgtcaacgtcgtaacatgcgtcgaaaagtgcgtgtcaataacgagaaaaatgaa
acaaaagcaaccgccgcaaatgctgaagttgttgagcagacaaaaaaatctgtcgaagat
aagcctgctcgtccaaagcgtaaaccaagagcgaaagtagaatcagtagagacaactgat
aacacggctgttgttgaaacaaatacagcggttactgctgaagcaactcaaacagctgaa
gtttctacgccgaaagaagacaagtcacgtgagcctcgcgaaggtcaacgtagaagccgt
cgtagtccacgccatcttcgtgccgcgggacaacgtcgtcgtcgtgacgaagagcagcca
actgatggaaacagctctgagccagcagcatttacacctaacgctccatatgagccaaca
gagcaagttcagtctgttgaagttgcagctaccacagtaagtgagccaaaaattgatact
ccgactgtagaagtgaaagcggaaaccgaaacgacacaaactgcaccagtaaaaggtaaa
gcaaactcgatggcgagttcgtctgcgatgaacacatcaccagtgtataagccagcagct
gaaactaaaccagtcgttgaagctaaacctgcagctgaagctaaacctgtagttgaagct
aaacctgctgttgaagctaaacctgctgttgaagctaaacctgtagttgaagctaaacct
gctgttgaagctaaaccagccgttgaagctaaaccagtcgttgaagctaaacctgctgtt
gaagctaaaccagtcgttgaagctaaacctgtagttgaagctaaacctgctgttgaagct
aaacctgctgttgaagctaaacctgctgttgaagctaaacctgctgttgaagctaaacca
gccgttgaagctaaaccagtcgttgaagctaaaccagtcgttgaagctaaaccagtcgtt
gaagctaaaccagtcgttgaagctaaaccagtcgttgaagctaaacctgtcgttgaagct
aaaccagtcgttaaagctaaaccagtcgttgaagctaaacctgtcgttgaagctaaacct
gctgttgaagctaaacctgcagttgaagctaaacctgcagttgaagctaaacctgcagtt
gcagcgaaagctgcatcagcgccaatggcaaaacctgcagcaatcaaacctgctgaaact
aaagaagctgaagttgtcgctaagcccgttaccacgcaaactaagccggcagcgaagcct
gcaagtcgttttggttcaatggtaatgtctgaaacaactaagccagttgtcaatgcaaga
gaaagtatcgcgacaccaaccggtcgccaatatgaagcctctgagcaatctgacgaagta
aaatctagagttgccaatagcgctaattcggatatgtcccgtacataa
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