KEGG   Shewanella youngdeokensis: RGE70_09235
Entry
RGE70_09235       CDS       T10660                                 
Name
(GenBank) AMP-binding protein
  KO
K01897  long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
Organism
syou  Shewanella youngdeokensis
Pathway
syou00061  Fatty acid biosynthesis
syou00071  Fatty acid degradation
syou01100  Metabolic pathways
syou01212  Fatty acid metabolism
syou02024  Quorum sensing
syou04146  Peroxisome
Module
syou_M00086  beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:syou00001]
 09100 Metabolism
  09103 Lipid metabolism
   00061 Fatty acid biosynthesis
    RGE70_09235
   00071 Fatty acid degradation
    RGE70_09235
 09140 Cellular Processes
  09141 Transport and catabolism
   04146 Peroxisome
    RGE70_09235
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    RGE70_09235
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01004 Lipid biosynthesis proteins [BR:syou01004]
    RGE70_09235
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:syou04147]
    RGE70_09235
Enzymes [BR:syou01000]
 6. Ligases
  6.2  Forming carbon-sulfur bonds
   6.2.1  Acid-thiol ligases
    6.2.1.3  long-chain-fatty-acid---CoA ligase
     RGE70_09235
Lipid biosynthesis proteins [BR:syou01004]
 Acyl-CoA ligase
  Long/very long chain acyl-CoA ligase
   RGE70_09235
Exosome [BR:syou04147]
 Exosomal proteins
  Exosomal proteins of breast milk
   RGE70_09235
  Exosomal proteins of breast cancer cells
   RGE70_09235
SSDB
Motif
Pfam: AMP-binding AMP-binding_C AMP-binding_C_2 Benyvirus_P25
Other DBs
NCBI-ProteinID: WOT06899
LinkDB
Position
2156262..2157917
AA seq 551 aa
MEKIWLEKSYPPGVEFEINPDKYRSLVELFFKYSKQFKDNTAFINMDASLSYQELAQQAT
DFAAYLQQDLGLVKGDKFAIMIPNTLQYPIALFGALIAGLTVVNVNPLYTSRELQHQLKD
SGTKGILILENFAHVLEKVINDTEVQHVVTTGVGDRLGMLKGSLVNGVLKYVKKQVPAYD
LPNAVKFNSAMLKGSKLTLTPVDVIGSDLAFLQYTGGTTGPSKGAMLTHRNMVANLEQSN
AVTRNVYEIGKEIMVTALPLYHVYALTSNCLCFIPFGGTNLLITNPRDMDGFVKELAKYP
FTVITGVNTLFNALLHTPGFDKIDFSTLKLGFGGGMSVQRPVAELWEKVTGSKLLEGYGL
TECSPLVTMSPYNQESYNGSIGIPASSTDIKLLGADGEEVGFGEPGEMWVKGPQVMKGYH
NRQDATNEVLVDGWLATGDIATMDENGFFTIVDRKKDMIIVSGFNVFPNEIEEVLVSHEG
ILEAAAVAAPSETTGETVKVYVVRTDPDLNELDVINHCAELLTNYKRPKIIEFIDELPKS
NVGKVLRKQLR
NT seq 1656 nt   +upstreamnt  +downstreamnt
ttggaaaaaatttggcttgaaaagagttatccaccaggggttgagtttgaaatcaatcct
gataaatatcgttcattagttgagttgttttttaaatattctaagcaatttaaagataac
accgcgtttattaatatggacgctagcctcagctaccaagagttggcacaacaagcaact
gattttgccgcgtacttacaacaagatcttggtctggttaaaggcgacaagtttgccatt
atgatccccaatacgctgcaatatccaattgcattgtttggggctctcattgccggctta
accgttgttaacgttaacccgctatatacctctcgcgagctacaacatcagcttaaagac
tcaggtacaaagggaattctaattctcgaaaactttgcccatgtacttgaaaaagtcatt
aatgacactgaagtacaacatgttgttaccacaggggtaggcgaccgcttaggtatgctt
aaaggaagccttgttaatggcgtactcaaatacgttaaaaaacaagtgccagcctacgac
ttacccaatgctgtaaaatttaacagtgccatgctaaaaggcagtaagctgacattgact
ccggttgacgttatcggcagtgacctggcatttttgcaatatacaggcggcaccactgga
ccgtcaaaaggtgccatgctaactcatcgcaatatggtggccaatttagaacaatctaac
gccgtgacccgcaatgtatacgaaataggcaaagagatcatggttactgcgttaccgctc
taccatgtgtatgcgttaacttctaactgtttatgctttatcccttttggtggaactaac
ttgttgatcactaaccctcgggatatggacggttttgtcaaagaattagctaaatacccc
tttactgtgattaccggcgtcaacaccttattcaatgcgctattacatactccagggttc
gataaaattgattttagtactttaaaacttggatttggcggtggtatgtcagtacagcgc
ccggtggctgagctgtgggaaaaagtgaccggcagtaaattgcttgaaggttatggctta
acagaatgctctcccttggtcacaatgagcccgtataaccaagaaagctacaacggcagc
attggtattcctgcctcatcgaccgacattaagctactcggcgctgacggcgaagaagtt
ggttttggcgaaccgggggaaatgtgggtaaaaggcccacaagttatgaagggttatcat
aatcgtcaagatgcaaccaatgaagtacttgtcgacggttggcttgccactggggatatc
gcaacgatggatgaaaatggcttttttaccattgttgaccgtaaaaaagacatgattatt
gtctctggttttaacgtgttcccaaatgagatcgaagaagtgttggtgtcacacgagggg
attttagaggccgctgccgttgccgcaccaagtgaaaccactggcgagaccgttaaggtg
tatgttgtacgtaccgatcctgatttgaacgagctagatgtgataaatcattgcgctgaa
ttactgaccaattataagcgcccaaaaattatagagtttatcgacgaattgccaaaatct
aatgttggtaaagtattgcgtaaacagcttaggtaa

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