Shewanella youngdeokensis: RGE70_09730
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Entry
RGE70_09730 CDS
T10660
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
syou Shewanella youngdeokensis
Pathway
syou03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syou00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RGE70_09730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syou03019
]
RGE70_09730
03400 DNA repair and recombination proteins [BR:
syou03400
]
RGE70_09730
Enzymes [BR:
syou01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RGE70_09730
Messenger RNA biogenesis [BR:
syou03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RGE70_09730
DNA repair and recombination proteins [BR:
syou03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RGE70_09730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
WOT03638
LinkDB
All DBs
Position
complement(2269560..2271488)
Genome browser
AA seq
642 aa
AA seq
DB search
MNNAHALLKQYFGFDSFRAGQQEVISTIIAGSSAAAIFPTGSGKSLCYQLPAIALPHLTL
VVSPLLALMQDQLAFLASRGIAAASIDSTQTPEQAAAVLDGVSDGSIKILMISVERLNNE
RFRRFIGGIDISLLVVDEAHCISEWGHNFRPDYLKLPSYQQALNIPQVLLLTATATAKVI
EDMGRKFNIAPADITLTGFYRPNLDIGAVGIKEQDKQQYLAQWLTAQQQSSGIVYVTLQK
TAEVIASYLQSQGYKALAYHAGLDNDRRSAIQAQFMRGEVPIIVATIAFGMGIDKSDIRF
VVHYDLPKSIENYAQEIGRAGRDAQQSQCLVLANKDNLNVLENFVFGDTPEQSAIAKVIG
EIQSVSQQTNSWEMMLNQLSTSSNIRPLSLKTLLVYLEMQGAIKPKFSYFAEYRYKLLTS
LPDILGRFDPERQSFVKAIIDTSSKAKIWHSADLNQLETVYPNSRGRAIKALDYLDQKQL
IELQSKQLTQVFDVFDEPLNDRGLPSRLFQQFKQKEQSEIQRINFLVSFFGSDHCLSLQL
AQYFSDPNVCSPCGHCSVCRQQVTVLPEPANLKPLSEYDFNAVTQEAVDKLKAQGSAVLL
TRFLCGLTTPVFTKLKLRQVKGFGYFERYRFQDVLHWVENHL
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacgcgcacgcgttattaaaacagtattttggatttgattccttcagagccggc
caacaagaggtgattagcaccataattgctggcagcagtgcagcagctatttttccgaca
ggttcaggtaagtcactttgttatcagcttccggccatagcattgccgcatttaacatta
gttgtatcgcccttattagctttaatgcaagatcaattagcatttttagcctcccgtggt
attgctgctgcatcaattgattctacgcaaacaccagaacaagccgctgccgtattagat
ggtgttagtgacggtagtatcaaaatattgatgatttcagtcgagcggctcaataatgaa
cgtttccgccggtttatcggtgggattgatatatcattattagtggtagacgaagcgcat
tgtatttcagaatggggccacaattttagacctgattacctcaaactaccgagttatcaa
caagcacttaatatcccgcaagtattattattgaccgcaacggctacagctaaagtgatt
gaggacatgggccgcaaatttaacattgcccctgctgatataactcttactggattttac
cggccaaatttagatatcggcgctgttgggataaaagagcaagataagcagcagtactta
gcgcaatggttaacggcacagcagcagtcaagtggcattgtttatgtgacattacaaaaa
acagcagaggtcattgcaagttatttgcagtcgcaaggttacaaagcgcttgcgtatcat
gctgggttagataacgaccgtcgcagcgccattcaggctcagtttatgcgtggtgaagtg
ccgattatcgttgcgactattgcatttggaatggggatagataaaagcgatattcgtttc
gttgttcattatgatctgcccaaatcaattgagaactatgcccaagagatagggcgagca
ggacgagatgcacagcagtcgcaatgtctggtattggcaaataaagataacttaaatgta
ttagagaattttgtatttggagacactccagaacagagcgccatcgctaaagttatcggt
gaaatacagtccgtgtcacaacagacaaatagttgggagatgatgctcaatcaattatca
acatcgtcgaatataaggcctcttagcttaaaaaccttactagtttacttagaaatgcaa
ggcgcaataaaaccaaaatttagttactttgctgaatatcgttataaattattaacttct
ttgccagacatacttggtcggtttgaccccgaaaggcaaagctttgtcaaagcgatcatt
gatacttcttctaaggcaaaaatttggcacagcgccgatcttaatcaattagaaacggtt
taccccaatagccgcggtcgtgccatcaaagcgctggattatttagatcaaaaacaattg
attgaactgcaaagtaagcaattgacgcaagtgtttgacgtatttgatgagcctctaaat
gatagaggcttaccaagccgtttatttcaacaatttaaacaaaaagagcaaagtgaaata
caacggattaattttttagttagtttctttggtagtgatcattgtttaagtttacaactt
gcacagtatttttccgaccccaatgtttgttctccatgcggccattgttctgtatgtcgg
caacaagttacagtattaccagagcctgccaatttaaagccgttgtccgagtatgatttt
aatgccgtcacgcaagaagccgtagataaacttaaagctcaaggttctgcagtgctgcta
acgcgttttttatgtggtttaaccacgccagtgtttaccaaattaaaactgaggcaagtt
aaaggctttggttattttgaacgttatcgctttcaagatgtattgcactgggtggaaaac
cacctgtaa
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