Shewanella youngdeokensis: RGE70_10295
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Entry
RGE70_10295 CDS
T10660
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
syou Shewanella youngdeokensis
Pathway
syou03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
syou00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
RGE70_10295 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
syou03400
]
RGE70_10295 (recB)
Enzymes [BR:
syou01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
RGE70_10295 (recB)
DNA repair and recombination proteins [BR:
syou03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RGE70_10295 (recB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
DUF7134
DUF3799
Motif
Other DBs
NCBI-ProteinID:
WOT07004
UniProt:
A0ABZ0K4N8
LinkDB
All DBs
Position
2398493..2402164
Genome browser
AA seq
1223 aa
AA seq
DB search
MADSTTLQSQPQVNITPEPLDTLTLPFGGSRLIEASAGTGKTFTIAGLYVRLLLGHGIEQ
ALTCEQILVVTFTNAATGELRDRIRKKIQLAYRCFIGLTVDDELISQLYTATPDADKPIA
RKRLDLALKSLDEAAIYTIHGFCQRILADMAFESSLLFESEFTLDDSEFLHHAVRDFWRE
KCYPLDESLAAIIQNKFASPDELSRQLKPLLGASSASAQPVPPAFDKIEAHLLESLNRLK
LIWPTERGQTEHLLHSLPLNGARFGKKADGYPKLALMLDALDNWVSFGSGLPPQKVLEQL
SLNELKLNKGGVIPSAEQAPILAHIERLASLVTQLIPSFLYSARDGIAKRFAQQKLERNL
LTPDDLLLTLAKALTVSQAQFLATSIAKRFPVALIDEFQDTDPLQFQIFSKIYQPTTVAQ
HTADNNTQSASSKQLSLLMIGDPKQAIYAFRGADIHTYIHAREQTAKHYNLDTNYRSNRQ
MVEAVNVIFEHRNDPFISASIPFEPVKAASFSDTKVLRESTTDKSALRLRILSEDPEKGL
NKTTARQLLASDVADEITRLLIDAQQHNCAISDAPLKARDIAVLVRDRHEANVIKQALEL
RLVGSVFLSRDSVFDTLEAREMLLVLYAMADPKDERALRSALATSLLGYSAAEINAFNQD
EDKRQVLLEQFAALQQQWLKRGIMPALLNLAAQAKVIERLLNHSEGERRLTDFRHLGELL
QQKATELDGMSALINWFEQALIGNQANEESQLKLASEQNLVQIVTIHKSKGLEYPICFIP
FVSLSRDNRKRPAPMLYHEHNKLVWDIEQSDDGWERQKRETLAEDLRLLYVALTRPVLKC
YLYITNHSRLTKSKGMTSQLNETAIGYLLGIEDKICEYSQLQSKARLLADKNPVAISLTE
LPAAGSGSFDNNFLSLPNKSSQDVELAPKALLRRHSTPWRVGSYSGLVKHLAHEKVLPGA
DDEQFPEVEIIVDDVDTQASRFSFERGANAGSFMHLVLELIDFTHAAPDLDEHLPNAMSK
YGIDEQWTDVLKDWYLDLLHAPLATDNSLSLAQLTSDKKLVEMEFYLPITQLNATKLNQL
LVDFGYSGGLMFDDLQGMLKGFIDLTFEHNQQYFIADYKSNHLGDSLIAYHYSNMKQAIR
SHRYDLQYIIYTLALHRYLGLRMPNYDYDQHIGGCFYLFLRGMSVSEPQSGVFYDKPPKA
LIEQLDLLFGNHASKHTSFAEAN
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atggccgactcaactacgcttcaatctcagcctcaggtcaatataaccccagagccactc
gataccttaaccctgccttttggtggaagtcgcctgattgaagccagcgctggaactggc
aaaacgtttaccatcgccggtctatacgtgcgtttactactcggccacggcatcgagcaa
gcgcttacctgtgaacagattttagtggttacttttaccaatgccgccaccggagaatta
cgcgatcgaatacgtaaaaaaatccaattagcgtaccgctgttttatcggtttaaccgtt
gatgatgaactgatatctcaactgtataccgcaacccccgatgccgacaaacccatagcc
agaaagcggttagatctggctttaaagtcactcgatgaagctgcaatctataccattcat
ggattttgccagcgcattctagccgacatggcctttgagtcatccttgttgtttgaatct
gaattcaccttagatgatagtgaatttttacatcatgctgtgcgcgatttttggcgtgaa
aaatgttacccattggacgaaagcttggcagctatcattcaaaataaatttgcaagtccc
gacgaattatcgcgccaactaaagccacttttaggtgcaagcagcgcctctgcccagcct
gtaccgccagcatttgacaaaattgaagctcatctattagaaagcttgaaccggttaaag
ttaatttggccaacagagcgaggtcaaactgaacacctattgcattcgttaccacttaac
ggtgctcgctttggaaaaaaagcagacggttacccaaaacttgccttaatgttagatgca
ctcgacaactgggtgagttttggtagcggattaccaccacaaaaagtgcttgagcaatta
tctctgaacgaattaaagctcaataaaggcggcgtgatccctagtgctgaacaagcacca
atactggctcatatagaaaggttagcgagcttagtcacccagctcattccgagttttctt
tatagtgcacgagatggcatagccaaacgatttgctcagcaaaaattagaacgcaatcta
ttgacaccagacgatctgttgttaactttggctaaagcgttaacagtgtcgcaagcgcaa
tttttagcgaccagcattgccaagcgctttccggtcgcgttaatcgatgagttccaagat
actgacccactgcaatttcaaattttcagtaagatctatcaacctacaacagtggcgcag
cacactgctgacaataatacacaaagcgcttcatcaaagcagttaagtctactgatgatt
ggcgatccaaaacaggcaatttatgcttttcgtggcgccgatattcacacttatatacat
gcgcgtgagcaaaccgctaaacattataatctcgataccaattaccgctctaatcggcaa
atggtcgaggcggtgaatgtaatttttgagcaccgaaatgatccgtttattagcgcatct
atcccgtttgaaccggtcaaagctgctagcttttctgatactaaagtgctgcgagagtcg
acaactgataaaagtgctttaagactacgcattctaagtgaagatcctgaaaaaggctta
aacaaaaccacagcaaggcaactacttgcaagtgatgtggccgatgaaataacccgctta
ctcattgacgcccaacaacataattgtgccattagcgatgcgcccttaaaagcccgtgat
attgcagtactcgttagagaccggcacgaagcgaatgtgatcaagcaagcgctagagctt
cgactagtcggttcagtctttttaagccgtgatagcgtttttgacacccttgaagctcga
gaaatgctgctagttttatatgccatggccgatccaaaagatgagcgggcattacgcagt
gcattagcgacctctttactcggttacagcgcggcagaaattaacgcctttaaccaagat
gaagacaaacgccaagtattgctcgagcaatttgcagcattacagcaacaatggcttaag
cgtggcattatgccggcattgttaaatttagcagcccaagccaaggttatagagcgatta
ctgaaccacagcgaaggtgaacgccgcctgactgactttaggcacttaggcgagctatta
cagcaaaaagccaccgagctcgatggcatgagtgcattaattaactggtttgaacaggcc
ttaattggcaatcaagctaacgaagagtcacaactcaaattagccagtgaacaaaacctg
gtacagattgttacgatccacaaaagtaagggcttggaatatccaatctgttttataccg
tttgtcagcttaagccgcgataaccgtaaaagaccagcgccaatgttgtaccacgagcac
aataaattggtctgggatattgaacaatctgacgatggctgggaacggcaaaaacgtgaa
accttagccgaagatctgcgcttactctatgttgcgctcaccaggcctgtacttaagtgc
tacttgtacataaccaaccatagccgcttaaccaaaagtaaaggcatgaccagccagttg
aacgaaacggctattggttacctgttaggaattgaagacaaaatctgtgaatacagccaa
ctgcaaagcaaagcgcggttactagcagacaaaaatcctgtcgcaattagcctaactgag
ctgcctgctgcgggctcaggcagcttcgataacaattttttatcgttgcccaataaatcc
agccaagacgttgaactagccccaaaagcgttacttcgccgtcacagcactccttggcgt
gttggcagttattccggtttagttaaacatctggcacatgaaaaggtcttgccaggggct
gatgatgaacagtttccagaagtagagattattgttgatgacgtagacactcaagcttca
cgctttagttttgagcgtggcgccaatgctggtagttttatgcatttggttttagagctg
attgactttactcacgccgcgccagatctagatgaacatttgcccaatgccatgagtaag
tacggtattgatgaacaatggactgacgtactaaaagactggtatttagatttacttcac
gcgccactagcaaccgataactcgctatcattggcacaattaacatccgataaaaaactg
gtagaaatggagttttacctgccgataacccagcttaacgccactaaactgaaccaactg
ctcgtcgattttggctacagcggtggcttaatgttcgatgatttacaaggaatgctcaaa
ggctttatcgatttaacctttgaacataaccagcaatattttattgccgattataagtct
aatcacttgggtgatagtctcattgcataccattacagcaatatgaagcaagcaattcgt
agccatcgctatgacttacaatacattatttacaccctagccttgcatcggtatttaggc
ctgagaatgcctaactatgattacgaccaacatattggcggctgcttttacttattcctc
aggggtatgtctgttagtgagccacaatctggagttttttatgacaaaccacccaaagcc
ttaattgagcagctcgatctattatttggcaatcatgcgtcaaaacatacatcgtttgcg
gaggccaactaa
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