Shewanella youngdeokensis: RGE70_12175
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Entry
RGE70_12175 CDS
T10660
Symbol
hupB
Name
(GenBank) nucleoid-associated protein HU-beta
KO
K03530
DNA-binding protein HU-beta
Organism
syou Shewanella youngdeokensis
Brite
KEGG Orthology (KO) [BR:
syou00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
syou03032
]
RGE70_12175 (hupB)
03036 Chromosome and associated proteins [BR:
syou03036
]
RGE70_12175 (hupB)
03400 DNA repair and recombination proteins [BR:
syou03400
]
RGE70_12175 (hupB)
DNA replication proteins [BR:
syou03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
RGE70_12175 (hupB)
Chromosome and associated proteins [BR:
syou03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
RGE70_12175 (hupB)
DNA repair and recombination proteins [BR:
syou03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
RGE70_12175 (hupB)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
Arteri_nsp7a
Motif
Other DBs
NCBI-ProteinID:
WOT04089
UniProt:
A0ABZ0JWF1
LinkDB
All DBs
Position
complement(2862977..2863279)
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AA seq
100 aa
AA seq
DB search
MRHKYIQGDDMNKSELIEKIASGADISKAAAGRALDSFIGAVTEGLKEGDKVALVGFGTF
EVRQRAERTGRNPQTGKEIKIAAANIPAFKAGKALKDAVN
NT seq
303 nt
NT seq
+upstream
nt +downstream
nt
atgcggcacaaatacattcaaggggatgacatgaacaaatctgaactaatcgagaaaatc
gcttctggtgctgacatttctaaagctgcggctggccgtgctttagactctttcattggc
gcagttaccgaaggtcttaaagaaggcgataaggttgctcttgttggttttggtactttc
gaagtgcgtcaacgtgcagaacgtacaggtcgtaaccctcaaacgggtaaagagatcaaa
attgctgcggcaaatattcctgcatttaaagcgggtaaagcgctaaaagacgctgttaac
taa
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