Shewanella youngdeokensis: RGE70_12910
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Entry
RGE70_12910 CDS
T10660
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
syou Shewanella youngdeokensis
Pathway
syou03030
DNA replication
syou03430
Mismatch repair
syou03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
syou00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RGE70_12910 (dnaE)
03430 Mismatch repair
RGE70_12910 (dnaE)
03440 Homologous recombination
RGE70_12910 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
syou03032
]
RGE70_12910 (dnaE)
03400 DNA repair and recombination proteins [BR:
syou03400
]
RGE70_12910 (dnaE)
Enzymes [BR:
syou01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RGE70_12910 (dnaE)
DNA replication proteins [BR:
syou03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RGE70_12910 (dnaE)
DNA repair and recombination proteins [BR:
syou03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RGE70_12910 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
WOT04228
LinkDB
All DBs
Position
complement(3036585..3040055)
Genome browser
AA seq
1156 aa
AA seq
DB search
MSDPRFVHLRVHSDFSMSDGLSKIKPILAKVSEMGMPAVALTDQTNMCGLVKFYGGCHGA
GIKPIIGTDFWVQVPGFDEFCSVTALAMNNEGYSNLTLLISEAYLRGHVKDKAVIDHEWL
AKHSEGLILLSGGRHGDIGRALLKGNLGQVDSLVEFYQTHFPDRFYLEILRTGRADEERY
LHMAVELAQKHDFPIVATNQVVFNEPEQFEAHEIRVAISDGFTLGDPRRPKKYSDQQYLK
SSEEMCELFDDIPEAIENTVEIAKRCNVTVRLHEYFLPNFPTGDLSIEDFLVVESEKGLE
ERLEFLFPDEHVRAQRRPEYDERLEIELKVINEMGFPGYFLIVMEFIQWGKDNDIPIGPG
RGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAEL
YGRDAVSQIITFGTMAAKAVIRDVGRVQGHPYGFVDRISKMIPAEPGMTLAKAFEAEPAL
QESYDGSEEVKDLIDMCRILEGVTRNAGKHAGGVVIAPTKITDFAPIYADAEGLNPVTQF
DKNDVETAGLVKFDFLGLRTLTIIDWALQMINSVKDKNGEERVRIESISLTDPKCFKLLQ
NCETTSVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGREEV
SYPDSQYQHESLKGLLSPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMA
KQRSSFESGSIANGVDGPLSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYAPQ
FLAAVMSADMDNTDKVVILVDECERLGIPIIPPDVNKGLFKFTVDDDLNIVYGIGGIKGV
GEGPVEAIINARKDGPFIDLFDFCARVDLKKLNRRVIEKLICAGALDNLGTHRAALVATL
PEAIRAADQHAKAEALGQHDMFGLLNTEPEDSKQQFVECTPWPDKVWLEGERDTLGLYLT
GHPINQYLKELKHYTSGRLKDVHPTDRGKTMKAAGLVVATRVMMTKRGSKMGLVTLDDKS
ARLEVMLFTEAFEKFNHLLEKDRILIIEGEVSFDDFSGGNRMTARNIIDMGEARSHFANA
VEVDLAAEEVNAEWLQRFQEAVEPWKNGAVPVLINYAQPQTKAQLSLGNEWRVNPTDELM
LALETLTGSDKVRIVF
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatcctcgttttgtgcatttacgcgtccacagtgacttttcaatgtctgatgga
ctgtctaagataaaacctattctggctaaagtcagcgagatggggatgcctgcggtcgcg
ctgaccgatcagaccaacatgtgtggcttagttaagttttatggtggatgccatggagca
ggaataaagcccattatcgggacagacttttgggtacaagttccaggctttgacgagttt
tgttctgtcactgccttagccatgaataatgaaggttattctaatctcacattgttaatc
agcgaagcttatctgcgagggcatgttaaagataaggctgttatcgatcatgaatggcta
gctaagcatagtgaagggctaatattgctctccggtggccggcatggggatatcggtcgt
gccctgttaaaaggcaacttggggcaagtagattctttagttgagttttatcagacacat
tttcccgataggttctaccttgagatcctccgtactggtcgcgcagacgaagaacgatac
ctacatatggctgttgaactggcacaaaagcacgacttccccatagtagcgaccaaccaa
gttgtgtttaatgagcctgagcaatttgaagcccatgaaatacgagtggcaatttctgat
ggtttcaccttaggtgatcctcgcaggcctaaaaagtacagtgatcagcaataccttaaa
agtagcgaggagatgtgtgagctatttgacgatattccagaagctattgaaaatacagta
gaaatagctaagcgttgtaatgttaccgttcgtttgcatgagtacttcttacctaacttc
ccaacgggtgatcttagcatcgaggattttttagttgttgagtctgaaaagggtcttgaa
gagcgtttagaatttttgtttcctgatgaacatgtcagagcgcaaagacgtccagaatac
gacgaacgcttagagattgaacttaaagttattaatgaaatgggcttcccaggctacttt
ttaattgtaatggagttcattcaatggggcaaagataacgatattcccattggccctggt
cgtggttctggtgccggctcattagtggcttatgccctgaagatcaccgacttggatccg
ctcgaatatgatttactatttgaacgattccttaacccagaacgtgtatcaatgccggat
ttcgatgtcgatttttgcatggatcgccgcgatgaggttattgatcatgtggccgaactt
tacggccgcgatgcggtgtcacagattattacctttggtacgatggcagccaaagcggtt
atccgagacgttggccgtgtacaagggcatccttatggttttgttgataggatctctaaa
atgatccctgcagagccgggtatgactctagctaaggcatttgaagccgaacctgctttg
caagaatcatatgacggcagtgaagaggttaaagacctcatcgatatgtgtcgaatttta
gaaggggtgactcgtaacgccggtaaacatgctggtggtgtagttattgctcccacaaaa
attactgattttgctcctatttatgcagatgctgaaggtctcaaccctgtaacacagttt
gataaaaacgacgttgaaacagcaggcttggttaagtttgatttcttgggtctaagaacg
ctcactattattgattgggcgttacagatgatcaactcggttaaagacaaaaatggtgaa
gaaagggtgcggattgagtcaatctcactgacggatcctaagtgttttaaattactacaa
aattgtgaaactacctcggtgttccagcttgaatctcgtggtatgaaagatttgattaag
cggcttcagcctgactgttttgaggatatgattgctctggtggcactgtttagaccagga
cctttgcagtcgggcatggtagataactttattgagcgaaagcacggccgagaagaagtt
tcataccctgattctcaatatcagcatgagtcattaaaaggtctactttcaccaacatac
ggcattattttgtaccaagagcaggtgatgcagattgcgcaggtgctcgccggctatacc
cttggtggcgcagatatgcttcgccgcgccatgggtaagaaaaagcctgaagaaatggcc
aagcaacgcagtagttttgaatcaggctctattgcaaatggcgttgacggaccactttcg
atgaagattttcgacttggttgaaaagttcgccggttatggttttaacaagtcgcattca
gcagcatacgctttagtgtcgtatcaaactttgtggcttaaaacccactatgccccccag
tttcttgccgctgttatgtctgccgatatggataatacagacaaggttgttattctcgtt
gatgaatgtgaacgtctaggcataccgattattccacctgatgtgaacaagggcttattt
aaatttaccgtcgatgacgaccttaatattgtttatggtattggtgggattaaaggggtc
ggtgagggacctgttgaggcaatcatcaacgcccggaaagatgggccgttcatcgacttg
tttgatttctgtgctcgagtcgatctcaaaaagcttaaccgcagggtcattgaaaagctt
atctgtgctggtgcacttgataatctaggcactcaccgtgcggcattagtcgctacgtta
cctgaagctatcagagccgcagatcaacacgctaaagctgaggcgcttggtcaacacgac
atgtttggtttattgaacacggaacctgaagatagcaagcagcagtttgttgagtgcacg
ccttggccagataaagtctggctagaaggcgagcgtgataccttaggcttgtatttaact
ggtcacccaattaatcaatatcttaaagaactcaagcactatacctcaggtcgactaaaa
gacgtgcaccctacggatcgtggtaaaaccatgaaagcggcgggcctagtggttgcaacc
cgtgtgatgatgactaagcgaggctcgaaaatgggcttagttacgcttgacgataaaagc
gcacgtcttgaggtgatgttatttaccgaagcctttgaaaagtttaatcacctactagaa
aaagatcgcatcttgattattgaaggtgaagtcagctttgatgacttttccggcggtaac
cgtatgacagcgcgaaacatcatcgacatgggcgaagctcgaagccacttcgctaatgcg
gtagaggttgatttagcggcagaagaggttaacgccgaatggttacagcgtttccaagag
gccgttgagccgtggaaaaacggtgcagtaccagtgcttatcaactacgcgcaacctcaa
actaaagcgcagttatcgctcggtaacgagtggcgagttaatccgacagatgagcttatg
ctagcgttagagacactaacaggctctgataaagtgcggatagttttttaa
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integrated database retrieval system
