Shewanella youngdeokensis: RGE70_13985
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Entry
RGE70_13985 CDS
T10660
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
syou Shewanella youngdeokensis
Pathway
syou02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
syou00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RGE70_13985 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
syou03021
]
RGE70_13985 (rpoD)
Transcription machinery [BR:
syou03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RGE70_13985 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF3391
Motif
Other DBs
NCBI-ProteinID:
WOT04423
LinkDB
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Position
3265146..3266975
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AA seq
609 aa
AA seq
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MDHTPQSQLKLLLAKGKEQGYLTYAEVNDHLPADMVDSDQIEDIIQMINDMGIRVYEQAP
DADDIMMSEDSTDDDAAEEAAAALATVEAELGRTTDPVRMYMREMGTVELLTREGEIVIA
KRMEEGIYSVQASVAEYPQAIAMILEQYDRYEAEEVRLSDIISGFVDPNAVDVAPAATHV
GSVLPESEIESSEEDDEEGDEEEGPKGPDPEEAKEKFTALRLAHEKVLQIISNKGRGHPE
ATVALFEIGETFKEFRLMPKQFDRLVKNMREMMDKVRVQERLIMKLCVEQAKMPKKNFVK
AYTSNESSIEWFNEELASGKSYAEGLNLVAFDVKRCRAKLDAIEKETGLAIGAIKDINRR
MSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRG
YKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPSPEELA
ERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATGESLCNAT
HEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRS
EILKSFLDE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atggatcatactccgcagtcgcaacttaaattgttgcttgccaaaggtaaagagcaaggt
tatttaacctatgcagaagttaacgatcacctacctgctgacatggtcgattcagaccag
atcgaagatattatccagatgatcaatgacatgggtattcgagtctatgaacaggctccg
gatgctgatgacatcatgatgtctgaagatagcaccgatgacgatgctgccgaagaagct
gctgccgctcttgctacagtagaagcagaactcggtcgtacaactgacccagttcgtatg
tacatgcgtgaaatgggcacagtagaactactgactcgtgaaggcgagattgtaattgct
aagcgtatggaagaagggatttactctgttcaagcttctgtcgctgaatacccgcaagcc
attgcgatgattcttgagcagtacgaccgctacgaagcagaagaagttagactgtctgat
atcatttcagggtttgttgacccgaatgcagtcgatgttgcaccagctgcaacgcacgtt
ggttctgttttgcctgaatcagaaatagaaagttctgaagaagacgatgaagaaggtgac
gaagaagaaggaccaaaagggccggatcctgaagaagctaaagagaagtttacagcactg
cgtttagcgcacgaaaaagtacttcaaattatctctaacaagggtcgtggccaccctgaa
gctactgtcgcattatttgaaatcggcgaaacctttaaagagttccgcttgatgcctaag
cagtttgaccgcttagtaaaaaacatgcgcgagatgatggacaaagtacgtgttcaagaa
cgtttaatcatgaagctttgtgttgagcaagctaaaatgccgaagaaaaacttcgttaaa
gcatatactagcaacgaaagtagcattgaatggttcaatgaagaactcgcctcaggcaag
tcttacgccgaaggactaaatctcgttgcatttgatgttaaacgatgtcgtgcaaagctt
gacgctattgagaaagaaaccggtttagccattggtgcaattaaagatatcaaccgtcgc
atgtctattggcgaagctaaagctcgccgagcaaagaaagagatggttgaggctaactta
cgtcttgtaatttctattgctaaaaagtacaccaaccgtggtctacagttcttggatctt
attcaagaaggtaatatcggtttgatgaaagcggttgataaattcgaataccgtcgtggt
tataagttctcgacttatgcaacttggtggatccgtcaggcgatcactcgttcaattgct
gaccaagcaagaacaatccgtattcctgtacatatgattgagacgatcaacaagctaaac
cgtatctctcgtcaaatgctacaagaaatgggtcgtgagccatctccggaagagcttgct
gaacgcatgcttatgcctgaagacaagatccgtaaagtgctgaagattgctaaagagcca
atctctatggaaacaccgattggtgacgatgaagattcgcatctaggtgattttattgaa
gatacaacccttgagttgcctttagactcagcgactggtgaaagcttgtgtaatgccaca
cacgaagtacttgctggcctaacagctcgtgaagctaaagtactacgtatgcgttttggt
atcgacatgaacactgaccacacgttagaagaagtcggtaagcaatttgatgttacgcgt
gagcgtattcgtcaaatcgaagcgaaagcgttacgtaaattgcgccacccttctcgctca
gagattctaaagtcgttcttggacgagtaa
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