Shewanella youngdeokensis: RGE70_14835
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Entry
RGE70_14835 CDS
T10660
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
syou Shewanella youngdeokensis
Pathway
syou03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syou00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RGE70_14835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syou03019
]
RGE70_14835
Enzymes [BR:
syou01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RGE70_14835
Messenger RNA biogenesis [BR:
syou03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RGE70_14835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
AAA_22
ERCC3_RAD25_C
P-loop_SecA
Sacchrp_dh_NADP
HEM4
Shikimate_DH
Utp25_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
WOT04588
UniProt:
A0ABZ0JWN3
LinkDB
All DBs
Position
3460275..3461753
Genome browser
AA seq
492 aa
AA seq
DB search
MSFASLGLSAQILKAVASKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL
ELLSKGNKAPAKQVRALVLTPTRELAAQVGESVELYGKNLPLKSAVIFGGVGIGPQISKL
SRGVDILVATPGRLLDLYNQRAVSFSQLEVLVLDEADRMLDMGFIHDIKKILAILPAKRQ
NLMFSATFSDDIRKLAKGLVNNPVEISVTPRNATANTVKQWICPVDKGQKAAVLVKLVKQ
HNWQQVLVFSRTKHGANRLAKNLEAKGITAAAIHGNKSQGARTRALAEFKSGDVRVLVAT
DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSDDEIKLLRDIEL
LIKQNLERSAIEGFEPTFTLAVTDLSGKSHGQNKGPRNSTPRGNNQRRANSGGKPSNNRS
QNTSQKDGKGKTEHKDGQRSGEAARGHKPNDKNPRHTASRKPAGGASAGKPSGQRRSNNP
NGQRRNNTSSQG
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgcttcactgggcttatcagcccaaattttgaaagctgttgctagcaaaggc
tatgacactccctctcctattcaagcacaagcgattcctgcagttcttgagggtaaagat
gttatggcagcggcacaaaccggtacgggtaaaaccgccggctttactttgcctctgtta
gaactactttcaaaaggtaacaaagccccagcaaaacaagtcagagccttagtgctcaca
ccaactcgcgagctagcagctcaagtgggtgaaagtgtcgaattgtacggtaaaaatttg
ccgcttaaatcagcggttatttttggtggtgttggtattggcccacaaatttctaaacta
agccgtggcgttgacattttagtggcaacaccaggccgtttacttgacctgtacaaccaa
cgcgctgtgagctttagtcagcttgaagtgttggtacttgatgaagccgatcgtatgtta
gatatgggctttattcacgacataaaaaaaatccttgcgatactacctgctaaacgtcag
aacttaatgttttcagcaacgttctcagacgacattcgtaaactcgccaaaggcttggtt
aacaacccagttgaaatttcggttacgccgcgcaacgccacggcaaacacggttaaacag
tggatttgcccagttgataaaggccaaaaagcggctgtgctagttaagctagtcaagcag
cataactggcaacaagtgttggtttttagccgtacaaagcatggggctaaccgcttagct
aaaaaccttgaagctaagggcattactgccgctgcgattcacggtaataaaagccaaggc
gcacgtactcgtgcattggcagaatttaaaagtggcgatgtacgcgtattggttgccacc
gatattgcagcccgtggccttgatattgaccaacttccgcaagtggttaactttgacctg
cctaacgtgcctgaggattatgttcatcgtattggacgtactggccgtgccggtgctact
ggccaagcggtatcattggttagtgacgatgaaattaaactgctacgcgatattgagttg
ctgattaagcaaaacttagagcgcagcgccattgaaggttttgagccaacctttacgcta
gcagttaccgatttaagcggtaagtcgcatggccaaaacaaaggcccacgtaatagcacg
ccacgtggtaataaccaaagacgcgctaattcaggtggaaagccatcaaataaccgcagc
caaaacactagccaaaaagatggcaaaggtaagactgagcataaagatggacagcgtagt
ggtgaagcagcacgtggccataaaccgaatgacaaaaacccaaggcatacggcatcacgt
aagccagccggtggtgctagcgcaggtaagccgtctggacagcgccgtagcaataaccca
aacggtcaacgccgcaacaacactagctctcaaggctaa
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