Shewanella youngdeokensis: RGE70_15420
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Entry
RGE70_15420 CDS
T10660
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
syou Shewanella youngdeokensis
Pathway
syou02020
Two-component system
syou02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
syou00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
RGE70_15420
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RGE70_15420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
syou03021
]
RGE70_15420
Transcription machinery [BR:
syou03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RGE70_15420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
WOT04689
LinkDB
All DBs
Position
3574145..3575650
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AA seq
501 aa
AA seq
DB search
MKASLQLKMGQQLTMTPQLQQAIRLLQLSSLELQQEIQQALDSNPLLELDEEQSDGEPIS
NEDRTTTDTDTYTESDNDYSASADIDPQQDHAAVETSDALTQDSMPDELPMDTTWDEVYT
VSSNSNSGGMRDDDMPFQGETSEGLYEHLEWQKNLTPFSDNDLAIATAIIDAIDERGYLT
QSCDDILEAMGDPEIEIDEIEAVLKRVQHFDPIGVAARDLSECLIIQLAQYSQDTPHIDN
ARLLIKDYLDLIAGRDFRQLMRKTKLKEDELREAIGLIQTLNPRPGLVVTRSKDEYVIPD
VSVAKKKGRWVVELNPDYMPKINVNQHYASMARSTKNQADGQFIRGHLQDAKWFIKSLES
RNDTLLKVTNCIVKFQQGFFEYGDEAMKPMVLNDIAEAVDMHESTISRVTTQKYMHTPRG
IFELKYFFSSHVSTDDGGECSSTAIRAFIKKLVAAENQKKPLSDSKMAQLLAEQGIKVAR
RTIAKYREAMMIPPSNQRKSL
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcgtcactccagctcaaaatgggtcaacagctcactatgactccacaattacag
caggcaatccgcctactgcaattgtcttctttagagttgcagcaagagatccagcaagca
ttagattctaatccgctacttgaattagatgaagagcaatccgacggcgaacctatcagc
aatgaagatagaacgaccaccgataccgacacctatacagaatccgataacgactacagc
gctagcgccgacatcgatccacaacaagatcacgctgccgttgagacctctgatgcatta
acgcaagactccatgccagatgagctcccaatggacacaacgtgggatgaagtttacacc
gtatcttccaattcaaattcaggcggcatgcgtgatgacgatatgccgtttcaaggcgaa
accagcgaaggattatacgaacaccttgagtggcaaaaaaacttaaccccattttccgac
aatgatctagccatcgccactgcaattatcgatgccatcgatgaacgcggttatctcact
caaagttgcgatgacattctcgaagccatgggcgaccctgaaatcgagatcgatgaaatt
gaagccgtacttaaacgagtacaacatttcgaccctatcggtgtggccgctcgcgatctc
agtgagtgtttaattatacagttagcgcaatacagccaagacactccgcacatcgacaac
gctagactacttattaaagattatttagatctcatcgccggacgcgactttaggcagtta
atgcgcaagaccaagctcaaagaagatgagctacgcgaagcgattggccttatccaaacg
cttaacccaaggccagggcttgtggtaacgcgcagtaaagacgaatatgttattcctgac
gtatcagtggccaaaaagaaaggccgttgggtggttgagctcaaccctgactacatgccc
aaaattaatgttaaccagcattatgcttcaatggcacgcagcaccaaaaaccaagcagat
ggccaatttattcgtggccacctacaagatgctaaatggtttatcaaaagccttgagagt
cgcaacgatacattattgaaagtgactaactgcattgtaaaattccagcaaggctttttt
gaatatggcgacgaagccatgaaaccaatggtgcttaatgatattgcagaagccgttgat
atgcacgagtccacgatatctagggtgaccacccaaaagtacatgcatactcccagaggt
atttttgaattaaaatactttttctcaagtcatgtgagtaccgatgacggtggtgagtgc
tcatctactgccatcagagcatttattaaaaaactagtcgcagctgaaaaccagaagaaa
ccattaagcgatagcaaaatggcacaacttctggctgaacaagggattaaagttgctcga
cgtaccattgcaaaatatcgcgaagcaatgatgatccctccttcaaaccaacggaaaagc
ttataa
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