Shewanella youngdeokensis: RGE70_16435
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Entry
RGE70_16435 CDS
T10660
Name
(GenBank) type I secretion system permease/ATPase
KO
K12541
ATP-binding cassette, subfamily C, bacterial LapB
Organism
syou Shewanella youngdeokensis
Pathway
syou02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
syou00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
RGE70_16435
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
syou02000
]
RGE70_16435
02044 Secretion system [BR:
syou02044
]
RGE70_16435
Transporters [BR:
syou02000
]
ABC transporters, eukaryotic type
ABCC (CFTR/MRP) subfamily
ABCC-BAC subgroup
RGE70_16435
Secretion system [BR:
syou02044
]
Type I secretion system
Adhesin protein transporter
RGE70_16435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC_membrane
AAA_21
SMC_N
Peptidase_C39
AAA_15
AAA_13
AAA_29
AAA_23
NACHT
nSTAND3
AAA_22
DLIC
AAA_24
Motif
Other DBs
NCBI-ProteinID:
WOT04881
LinkDB
All DBs
Position
3838936..3841113
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AA seq
725 aa
AA seq
DB search
MTVSASKKTEQWTISASQRVTVDPLLDSLVLLTEHFGSPCSCDSLAAGLPMQGNVLTPEL
LPQAAARAGLAAKLSRKGLNEITPILLPCILLLKDKKACLLRELDIENDKATIQLPETGG
EETLSIEELEAIYVGYLFLVKQEYRGDMGFDVHLHENKSHWLLQTLKDSTPIYRDALIAS
VLVNLFALVSPLFIMNVYDKVVPNLAFDSLWVLAIGAGIAYVFDFILRQLRSYLIDIAGK
KVDIIVSSQLFAKAIGIPLEKRSPSVGGMAKQLGEFDSIRDFLTSATITALVDLPFALFF
LTIIYLVAGDLAIIPLIGSFIIIGYTLIMQPKLKAAIEESNKFSGLKHGHLIESLSSLES
IKSSGAEGLVQKSWQQMIGHTANWQLKSKQITTSVTNVATFVVQTSVICVVILGVYRVAD
NAISMGGIIAAVMLSSRAISPMAQLAGLMTRANQTASSLRQVNEIMKQEDEFENKGHLVS
RQRLRGQINAHHMSFSYPNSERPILHPLSIKIQPGERVAIIGRNGSGKTTLAKILVGLFQ
PNKGSLTYDGLDSAQIHPSDLRRNFGYLPQDITLFHGTIRDNILFGTRQVTEHQLIRAVQ
LSGVNLFTNLESEGLDQQVGEGGRELSRGQRQTIALARATLNDPPVLLMDEPTASLDARA
EKQFIQAMHNVTKDRTLLLITHKMHLLNLVDRIIVMDRGHIVADGPKAGVLKKLNEGLIA
GALNK
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgtttcagcttctaagaaaactgaacaatggactatttcggcctcacaacgtgta
accgttgacccattgttagacagtttagttttacttacagaacacttcggtagcccttgc
tcttgtgactcacttgcggcaggtctacctatgcaaggaaatgtactcacccccgaatta
ttacctcaagcagcagcaagggctgggttagccgctaaattgtcacgcaaagggttaaat
gaaataacccccatcttactaccgtgtattttgctattaaaagataaaaaagcctgtctg
ctccgtgaacttgatattgaaaatgacaaagcaacgattcaattacctgaaactggcgga
gaagaaacattatccattgaagaactagaggcaatttatgttggttacctatttttagtt
aaacaagaatatcgtggcgacatgggctttgatgttcacctccatgaaaataaatcacac
tggctactgcaaacgctcaaagattctaccccgatttaccgcgatgcattaattgcatcc
gtactcgtcaacttgtttgcgctcgtatcacctttatttattatgaatgtgtacgataaa
gttgtaccaaacctcgcttttgactcactttgggtattagcgattggtgccggaatagcg
tatgtatttgactttattttgcgccaactacgtagctatttaattgatatagcaggtaaa
aaagttgatattattgtctcttcacaattgttcgccaaagccattgggatcccattagaa
aagcgctcacccagcgttggcggcatggcaaaacaactcggtgagtttgacagcattcgc
gactttctaacgtcagcaaccattaccgcattagttgatttgccctttgccctatttttc
ctaactattatctatttagtcgcgggtgatctggcaatcattccattaattggcagtttt
attattattggctacaccctcataatgcagccaaaacttaaagcagcaatagaagaaagt
aacaaattttcaggcttaaaacacggccacctaatcgagtcactgtcgtcacttgagtcc
attaaatcgagtggtgctgaaggcttagtacaaaaaagttggcaacaaatgatcggtcat
accgccaactggcagttaaagtcaaaacaaatcaccacatcagtaacgaatgtagctaca
tttgtagtgcaaacatccgttatttgcgtagtcattcttggggtatatcgagtggcagat
aatgctatttcgatgggtggcatcatcgcagccgtgatgctgtctagccgtgcaatttca
cctatggctcagctagcaggcttaatgactcgcgcgaatcaaacagcaagctcattacgc
caagttaacgagatcatgaagcaagaagacgaattcgaaaataaagggcacttagttagc
agacaaagactgcgtggccaaattaatgcccaccatatgagctttagttacccgaattca
gaacgaccaatccttcatcctttatctattaagatccaaccgggtgaaagagtcgcaatt
atcgggcgaaatggctcaggcaagacaactttggcaaaaatattggtcggactattccag
ccaaataaaggtagcttgacctatgacggcctcgattctgctcaaatacacccaagtgat
ctaaggcgtaactttggatatttaccacaagatattaccttgtttcacggcaccattcgc
gacaacatcttgtttggtacccgccaagtaacagagcatcaattgataagggcggtacaa
ttatcaggtgttaacttatttacaaacttagagtcagaaggactagaccaacaagttggt
gaaggtgggcgggagctgtctcgcggccaaaggcaaacaattgcattagcacgagcaacg
ctgaacgacccccctgtattactaatggatgaacccactgccagcttagatgctagagcc
gaaaagcagtttattcaagcgatgcataatgtaaccaaagatcgcaccttactgctgatc
acgcataaaatgcatttgcttaatttagttgatcgcatcattgtcatggatcgcggccat
attgttgccgacggtcctaaagctggtgtactcaaaaaactgaatgaagggttaattgca
ggagcattaaacaaatga
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