KEGG   Shewanella youngdeokensis: RGE70_16695
Entry
RGE70_16695       CDS       T10660                                 
Name
(GenBank) AMP-binding protein
  KO
K01897  long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
Organism
syou  Shewanella youngdeokensis
Pathway
syou00061  Fatty acid biosynthesis
syou00071  Fatty acid degradation
syou01100  Metabolic pathways
syou01212  Fatty acid metabolism
syou02024  Quorum sensing
syou04146  Peroxisome
Module
syou_M00086  beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:syou00001]
 09100 Metabolism
  09103 Lipid metabolism
   00061 Fatty acid biosynthesis
    RGE70_16695
   00071 Fatty acid degradation
    RGE70_16695
 09140 Cellular Processes
  09141 Transport and catabolism
   04146 Peroxisome
    RGE70_16695
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    RGE70_16695
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01004 Lipid biosynthesis proteins [BR:syou01004]
    RGE70_16695
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:syou04147]
    RGE70_16695
Enzymes [BR:syou01000]
 6. Ligases
  6.2  Forming carbon-sulfur bonds
   6.2.1  Acid-thiol ligases
    6.2.1.3  long-chain-fatty-acid---CoA ligase
     RGE70_16695
Lipid biosynthesis proteins [BR:syou01004]
 Acyl-CoA ligase
  Long/very long chain acyl-CoA ligase
   RGE70_16695
Exosome [BR:syou04147]
 Exosomal proteins
  Exosomal proteins of breast milk
   RGE70_16695
  Exosomal proteins of breast cancer cells
   RGE70_16695
SSDB
Motif
Pfam: AMP-binding AMP-binding_C_3
Other DBs
NCBI-ProteinID: WOT04928
LinkDB
Position
3904067..3905722
AA seq 551 aa
MESTIKTPIEMLEHWVEKQGDNVYLKQPIDGQFKNFTWREVQTQMQQIAGALRHLGLNRG
DKVAIFSKNCAEWFITDLALMHGGYISVPIYPTANADTICYTLEHSESKAIFIGKLDHWA
EQELGVGGEILRLAMPYDTMPAQYHWDKLLTLGQPLIDAPLPTLEQIMTLVYTSGSTGKP
KGAIHTFASYSWTCNTVVRDLKTNVSDRLISYLPLAHITERVAKEGSSFYSGSSVAFVES
LDSFVVDVQRAQPTVFFSVPRLWNLFQKKIIDTIGDSRLNLMLKVPILSGIVKRKIHKAL
GLEHCHMLGSGSAPIPPSLITWYHKVGLNISEAWGMTENCAYSIINSPFNVKKIGTVGRA
VDGCDVKLSDVGELLVKSPGLMQGYYKQPEETAACFDKDGYFLTGDLANIDEDGYVSITG
RVKDNFKTSKGKYVAPVPIERKLAQDLHVEMICVIGSGLPHPIALVQLSEGGYLQPREEV
TTSLKTTLDAVNPHLESHETVDAIVVVTEKWEVDNDVLTPTLKIKRHVLEQRYSERVDGI
RGGKICWEDEL
NT seq 1656 nt   +upstreamnt  +downstreamnt
atggaatcaacaatcaaaaccccaattgaaatgcttgagcattgggttgaaaaacagggc
gataatgtctatctaaagcaacctattgacggtcaatttaaaaacttcacctggcgtgaa
gtgcaaactcaaatgcaacaaattgcaggtgccctaaggcatctaggcctaaatagaggc
gataaagtcgccatattttctaaaaactgcgccgaatggtttattactgacttagccctt
atgcatggtggttatatcagtgtacctatttacccaacagccaatgccgacactatttgc
tacacgctcgaacacagcgaatctaaagcgatttttattggcaaactggaccactgggct
gagcaagagttaggagttggcggcgagatcctgcgtttggcaatgccatacgataccatg
ccagcacagtaccattgggacaaactacttaccctaggacaaccactaattgacgcgcca
ttacccacacttgagcaaatcatgacgctggtttacacctcaggctcaaccggtaagcct
aagggcgcaattcatacttttgctagttattcttggacttgtaataccgtagtccgtgat
ttaaaaactaacgtcagtgacaggttaatatcgtatttaccacttgcccatatcaccgag
cgagtcgcaaaagagggctcatctttctactctggtagtagcgtagcctttgttgaaagc
ttagatagctttgttgttgatgtgcaacgggcacagccaacggtattcttttcagtgcct
cgtttatggaacctattccagaagaaaatcatcgataccattggcgacagcaggctaaac
ttgatgcttaaagttccgatccttagtgggattgttaaacgaaaaattcataaagcactc
ggtctagagcactgccatatgctgggttcaggttcagcgcctattccaccgtcactcatt
acttggtatcacaaggttggactcaatatttcagaagcgtggggcatgacggaaaactgt
gcgtactcaatcattaactctcccttcaatgtcaaaaaaattggtaccgttggccgcgct
gtagacggttgtgacgttaaattgtccgatgttggagagctactagttaagagcccagga
ttaatgcaaggctattacaaacaaccagaagaaacggcagcgtgctttgataaagacggc
tattttcttaccggtgatttagcgaatattgatgaagatggttatgtgtcaattacaggc
cgagtgaaagataatttcaaaacctcaaaaggtaaatatgttgctccggtaccaattgag
cgaaaactagcacaagatctacatgttgaaatgatctgtgttattggttctggcctacct
caccccattgcactcgttcagttatctgaaggcggatatttacaaccaagagaagaggtt
acaacctcacttaaaacgaccttagatgcggtaaatccacatttagagtcgcacgaaacg
gttgatgctatcgtagtcgttactgaaaaatgggaagtcgataatgatgtgttaacccca
acgctaaaaatcaaacgccatgtattagagcaaagatatagcgaaagggttgatgggatc
cgcggcggaaaaatttgttgggaagacgaactctaa

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