Shewanella youngdeokensis: RGE70_17110
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Entry
RGE70_17110 CDS
T10660
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
syou Shewanella youngdeokensis
Pathway
syou03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syou00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RGE70_17110 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syou03019
]
RGE70_17110 (recQ)
03400 DNA repair and recombination proteins [BR:
syou03400
]
RGE70_17110 (recQ)
Enzymes [BR:
syou01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RGE70_17110 (recQ)
Messenger RNA biogenesis [BR:
syou03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RGE70_17110 (recQ)
DNA repair and recombination proteins [BR:
syou03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RGE70_17110 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
HEM4
Motif
Other DBs
NCBI-ProteinID:
WOT04991
LinkDB
All DBs
Position
complement(4007901..4009724)
Genome browser
AA seq
607 aa
AA seq
DB search
MVQAALEQPVDQLAASLQSVFGYRTFRDGQREVIEQICAGQDCLVIMPTGGGKSLCYQLP
ALQLPGLTIVVSPLISLMKDQVDSLIQTGVSAAYLNSSQPREESLQILQKMRYGELKLLY
VSPERLLQASFIDRLHELNISLFAIDEAHCISQWGHDFRPEYAALGRLRQQFPHVPIMAL
TATADNATRLDICERLAIQPFSLLTSFDRPNIRYTVAEKLNAANQLRQFVDAQNGSSGII
YCSSRRRVDEVADRLRLQGHQAEAYHAGKTQEERADVQDRFLKDQLDIVVATVAFGMGIN
KSNVRYVVHYDIPKSVEAYYQETGRAGRDGLDSEALMLFDPADIGRVRHLIEQSEPGPQQ
QVEFHKLNTMAAFAEAQTCRRQVLLHYFDESALEPCGNCDICLDPPKKYNGIQDAQKVLS
CIYRLGQRFGVNHLIEVLRGSKAANVMERGHHKLSTWGIGKEKSHEHWLSVIRQLIHLGL
ASQDITRGSSVTLNPAARAVLKGDVELLLAEPRIVIQTTKRRGHNPKTPSNYDRKLFAKL
KSLRRTLAEELDVPPYLVFNDATLAEMAAILPTSPGELLAVNGVGERKLERFGGEFLDEI
ENYLATN
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggttcaggcggcgctcgaacaaccagttgatcaattagcagcaagtctccagtcggta
ttcggataccgtacctttagggacggtcagcgagaggtgattgaacagatctgcgctgga
caagattgcctagttatcatgcctaccggtggtggtaaaagcctgtgttatcaattaccc
gcattacagctaccgggtttgacaattgtggtttcaccgctgatctcgttaatgaaagat
caggtcgacagtctgatacagacgggtgtatcggcggcgtacttaaactcatctcagcct
cgtgaagagagcctgcagattttgcagaagatgcgttatggcgaactcaagctattgtat
gtgtcgccagagcgattactgcaagcgagctttatcgatagattacacgagctcaatatt
tcgctgtttgcgattgatgaagcgcattgtatttcgcagtggggccatgactttaggcca
gaatacgctgcgctaggtcgattacggcagcagtttcctcacgtaccgattatggcgtta
acggctacggcggataatgcaacacgcctagatatttgtgaacgtttagcgattcagccc
ttttcgttgctcactagtttcgataggccaaatattcgttataccgttgctgaaaagctc
aatgcggctaatcaattacgccaatttgttgatgcacaaaatggtagcagtggcataatt
tactgcagtagtcgacgtcgggttgacgaagtggccgatagattgcggctgcaggggcat
caagctgaagcgtatcatgcaggtaaaacgcaagaagaacgcgccgatgtgcaagaccgc
tttttaaaagaccagctcgacattgtggtggcgaccgtggcgtttggcatgggtatcaat
aagtccaatgttcgctatgttgtgcattatgacatccctaaaagcgtagaagcctattac
caggaaactggccgagcgggtcgagatgggctcgattctgaagcgttaatgctgtttgac
cctgccgatattggcagagtaaggcatttaattgagcaatcagagccgggaccgcagcag
caagttgagtttcataagctcaataccatggcggcatttgctgaagcacaaacatgtcgc
cgccaagtactactgcattattttgatgaaagtgcgttagagccctgcggtaactgcgat
atttgtttagatccgcccaaaaaatacaatggtattcaagatgcgcaaaaagtcctgtct
tgtatttatcgtctgggacagcgctttggggtgaaccacctgattgaagtcttgcggggg
tctaaagcggcaaacgtgatggagcgagggcatcataaattatcgacctggggcattggc
aaagaaaaaagccatgaacattggcttagtgttatcaggcagttaattcatttagggcta
gcgagtcaagacattacacgtggctcatcagtcacgttaaatccggctgcaagagcggtg
ctaaaaggggatgttgagttacttttggcagagcctcgcattgtgatccaaacaacaaag
cggcgcggtcataaccctaaaactccgagcaattacgaccgtaaattgtttgctaaatta
aagtcattacgtcgaactttggccgaagagctcgatgtgcctccgtacttggtatttaac
gatgccaccttagctgaaatggcggccattttacccactagtcccggcgagttgttagcc
gtgaatggcgtaggtgagcgtaagttagaacgttttggtggtgagttcttagacgaaata
gaaaactacctagccaccaattaa
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