Shewanella youngdeokensis: RGE70_17985
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Entry
RGE70_17985 CDS
T10660
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
syou Shewanella youngdeokensis
Pathway
syou03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
syou00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RGE70_17985 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
syou03021
]
RGE70_17985 (rpoB)
03400 DNA repair and recombination proteins [BR:
syou03400
]
RGE70_17985 (rpoB)
Enzymes [BR:
syou01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RGE70_17985 (rpoB)
Transcription machinery [BR:
syou03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RGE70_17985 (rpoB)
DNA repair and recombination proteins [BR:
syou03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RGE70_17985 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
WOT05155
UniProt:
A0ABZ0K0A9
LinkDB
All DBs
Position
complement(4216420..4220451)
Genome browser
AA seq
1343 aa
AA seq
DB search
MVYSYSEKKRIRKDFGKRPRVLDIPYLLSIQLDSFKKFTDQDPTGERGFEAAFRSVFPIK
SFSGNSELQYVSYKLGEPVFDVKECQIRGITYSAPLRVKLRMVLYDREAAPGTVKDIKEQ
EVYMGDIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDALFVRIDRRRKLAATIILRALDYSTQDILDLFFKRVNFKIKNDSLVMD
LVADRLRGETASYDIKVADGTILVEKGRRITARHIRQLEKTNTTELEVPVEYIVGKISGQ
DYIDPDTGEVLVSANAEIGLEDLAKLSLAGIKEVSTLYINELDNGAYISDTLRIDSTTNR
LEALVEIYRMMRPGEPPTKDAAEALFNNLFFSEERYDLSKVGRMKFNRRLSIDDDEGTGI
LSKEDIVAVMKNIIAIRNGFDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERL
SLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLSTFARTNSYGFLETPYRKVIDGVV
TDEVDYLSAIEEGRYVIAQAIVELDENGRMMDELIACRHKGDSTFMGAADIQYMDVSPQQ
IISVAASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGIERNLAVDSGVVVVAK
RGGYIDYVDASRIVVKVNESELHPGEAGIDIYNLTKYTRSNQNTCINQRPCCSMGDPVVT
GDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAMEDRFTTIHIQELSCI
ARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNSVKGTIIDVQVFTRDGVDKDKRAVEIEELQIAEAKKD
LTEEFQILEEGVLGRARNLLLAAGFDEEQLTAIPRSQLLVQAIDDEAKQTELEQLAEQAE
ELKADFDKKFEVKRRKITQGDDLAPGVLKIVKVYLAVKRTIQPGDKMAGRHGNKGVISKI
CPVEDMPYDEKGNPVDIVLNPLGVPSRMNIGQVLEVHMGAAAKGIGNRITEMLEEQRELA
ELRGYIKEVYELGDEVQQRVDIDSFTDDEILRLAKNLKGGVPTATPAFDGAKEKEIKQML
ALAGLPTSGQLTLCDGRTGNEFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPL
GGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTQMYKNIVDGNYQMQPGM
PESFNVLLKEIRSLGINIELDTK
NT seq
4032 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctattctgaaaagaagcgtattcgcaaagacttcggtaaacgtccacga
gttttggacatcccttacctactgtcaatccagttggactcttttaagaagttcaccgat
caagatcctacaggtgagcgtggttttgaagctgctttccgtagcgtttttcccatcaag
agcttttctggtaactcagagctgcaatatgtcagctacaaactgggtgagcctgtcttt
gatgtgaaagagtgtcaaatccgcggtattacatattctgctccattgcgcgttaaattg
cgtatggtgctgtatgaccgtgaagctgcacctggcacagtaaaggatattaaagaacaa
gaagtctacatgggggatatccctctaatgactgaaaacggtacctttgttatcaatggt
actgagcgtgtaattgtatctcagctgcaccgtagcccgggcgtattctttgatcatgac
cgtggtaaaacccactcttcaggtaaggtgctttataatgcacgtattattccttaccgt
ggttcttggttagactttgaattcgatcctaaagatgcattgtttgttcgtattgaccgc
cgtcgtaaattggctgcaacgatcattcttcgcgcgctagattattcaactcaagatatt
cttgatctgttcttcaaacgcgtaaactttaagattaaaaacgattcattagttatggat
ctcgttgctgatcgcttacgtggtgaaacagcaagttacgatattaaagttgcagacggc
actattcttgttgaaaaaggacgtcgcattactgcacgtcatattcgtcaacttgaaaag
actaatacgactgagcttgaagtacctgttgagtacatcgttggtaagatttctggtcaa
gactacattgatccagataccggtgaagtattggtttcagctaacgctgaaattggtcta
gaagaccttgctaaactttcacttgctggcattaaagaagtaagcacactgtatattaat
gaacttgataacggtgcttatatttctgacactttacgtattgattcaacaacgaaccgc
ttagaagcgcttgttgaaatctaccgtatgatgcgcccaggcgagccaccaaccaaagat
gctgcagaagcgttatttaataaccttttcttcagcgaagaacgctatgacctttctaaa
gttggtcgtatgaagttcaatcgtcgtcttagcattgatgatgacgaaggtacgggtatc
ctctctaaagaagatatcgttgccgtgatgaaaaacatcatcgctatccgtaacggattt
gacgaagttgatgacatcgatcacctaggtaaccgtcgtatccgtagtgttggtgaaatg
gctgaaaaccaattccgtgtaggtctagttcgtgttgaacgtgccgtacgtgagcgtttg
agccttggtgatctgaatgagcttatgcctcaggatttgatcaacgcaaaaccaatttct
gctgctgttaaagaattctttggttcttcacagctttcacaattcatggatcaaaacaac
ccgctatcagaagtgacgcataagcgtcgtatttctgcgcttggcccaggtggtttgact
cgtgaacgtgctggtttcgaagttcgagacgtacatccgacgcactacggtcgtctatgt
cctattgaaactccggaaggtccaaacattggtttgatcaactcgttgtcaacctttgct
cgcaccaatagctatggcttccttgaaacaccttaccgtaaggtaatcgatggtgtagta
actgacgaagtagattacttgtcagctattgaagaaggtcgttacgttattgcacaggct
atcgttgagttagacgaaaatggccgcatgatggatgagcttatcgcttgtcgtcataaa
ggtgattcaacctttatgggtgcagctgatatccaatatatggatgtatcaccacagcag
attatttctgttgcggcatcgctaattccgttcttagaacacgatgatgctaaccgtgca
ttgatgggtgcgaacatgcaacgtcaagccgtgccaacactaaaagctgataagccatta
gtcggtactggtattgagcgtaaccttgcagttgactctggtgttgttgttgttgctaag
cgtggtggttatattgactacgtagatgcaagccgcattgttgtaaaagttaacgaatct
gagctacaccctggtgaagctggtatcgatatctacaacttgactaaatacactcgttct
aaccagaacacgtgtattaaccaacgtccttgttgttctatgggtgatccagttgttact
ggtgatgttcttgctgatggcccttctaccgatttaggtgacttggctcttggtcagaac
atgcgtatcgcatttatgccttggaatggttacaactttgaggattcaatccttatctct
gagcgtgtggctatggaagatcgtttcacgacaatccatatccaagagctatcttgtatc
gctcgtgatactaagctaggtagcgaagagatcacagctgatattccaaacgttggtgag
tctgcgctttctaagctggatgaatcaggtatcgtttatatcggtgctgaagttaagggt
ggcgacatcctagttggtaaagtgacacctaagggtgaaacacagctaactccagaagag
aaactcctccgagctattttcggcgaaaaagcttctgacgttaaagacagttcattacgt
gtacctaactctgttaaaggtactatcatcgacgtacaagtatttactcgtgacggtgtt
gataaagataagcgtgctgttgagattgaagagctacaaatcgcggaagcgaagaaggat
ttgactgaagagttccaaattcttgaagaaggtgttcttggtcgtgcacgcaacctattg
ttggctgctggtttcgatgaagaacaacttacagctattccacgctcacaattgttggtt
caggccatcgatgatgaagctaagcaaactgagctagagcaactagctgagcaagcggaa
gagctaaaagctgatttcgataagaaatttgaagtcaagcgtcgtaagatcactcaaggt
gatgatttagcaccaggtgtactgaaaattgttaaggtttaccttgcagttaaacgtacg
atccaaccaggtgataagatggcgggtcgtcatggtaacaaaggtgtaatctctaagatt
tgccctgttgaagacatgccttacgatgaaaaaggtaacccagtggatatcgtattgaac
ccactaggtgtaccttcacgtatgaacatcggtcaagtacttgaagttcatatgggtgct
gcagctaaaggtatcggtaaccgtattactgaaatgcttgaagagcagcgcgaattggca
gaattacgcggttacatcaaagaagtatatgaattaggtgacgaagtgcagcagcgcgtt
gatatcgattcattcactgatgatgaaatcctgcgtcttgctaaaaaccttaaaggtggt
gtaccaacagctacacctgcgtttgatggtgccaaagagaaagagatcaagcagatgctt
gctcttgcaggtctaccgacatcaggtcagctaacgctttgtgatggtcgtactggtaac
gaatttgagcgtcaagtaacagttggttacatgtacatgctcaagcttaaccacttggtt
gacgataagatgcacgcccgttctactggttcgtacagtcttgttactcagcaaccattg
ggtggtaaagcacagttcggtggtcagcgttttggtgagatggaagtatgggcacttgaa
gcttacggtgctgcatatacccttcaggaaatgctaaccgttaagtcagatgatgtgaac
ggtcgtactcagatgtataaaaacatcgtcgacggtaactatcagatgcaaccaggtatg
cctgaatctttcaacgtattgttgaaagagatccgttcgctcggtatcaacattgagttg
gataccaagtaa
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integrated database retrieval system
