Picosynechococcus sp. PCC 7002: SYNPCC7002_A0788
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Entry
SYNPCC7002_A0788 CDS
T00664
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
syp
Picosynechococcus sp. PCC 7002
Pathway
syp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SYNPCC7002_A0788 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syp03019
]
SYNPCC7002_A0788 (rne)
03009 Ribosome biogenesis [BR:
syp03009
]
SYNPCC7002_A0788 (rne)
Enzymes [BR:
syp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SYNPCC7002_A0788 (rne)
Messenger RNA biogenesis [BR:
syp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SYNPCC7002_A0788 (rne)
Ribosome biogenesis [BR:
syp03009
]
Prokaryotic type
rRNA processing factors
SYNPCC7002_A0788 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
ACA98792
UniProt:
B1XI41
LinkDB
All DBs
Position
814563..816644
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AA seq
693 aa
AA seq
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MPKQIIIAEQHQIAAVFWEDQIQEIVVSTGAQQVGDIYLGIVENVIPGIDAAFVNIGDTE
KNGFIHVSDLGPIRLRKNSSSITELLEPQQKALVQVMKEPTGNKGPRLTGNITLPGRYVV
LMPYSKGVNLSRRISSDSERNRLRALAVLMKPPGMGLLVRTEAEGTDEEAIIEDLELLQK
QWEAIQQQANYGRPPTLINRDDDFIQRVLRDMYSDEVNRIVVDSASGMKRVKSQLMNWEG
GKAPDGLLIDHHREKQSILDYFRVNAAIREALKPRVELPSGGYIIIEPTEALTVIDVNSG
SFTKSATARETVLWTNYEAATEIARQLRLRNIGGVIVVDFIDMDSRHDQLKLLEHFTSIL
KADKARPQIAQLSELGLVELTRKRQGQNIYELFGKPCAHCNGLGHLVHLPGEEEPVPLQL
NILSSLSLQGGARTPGESRPVLSGGRRGTTSHGRRITSRVARSKLINAGNTPAAEPLNLV
HHPDYQEQSSNNNNRRRRRRSPEVSSKPVLRDEKETQDNGGDRPSAETPTKEKKETKTSS
PQDNSNTSSRYDRRERSRYRRDEPKETVQVEMTEQEKNVYALIGVSPLVRLDAAGKKDPR
STIIEIVRPGSAKETDATSEKVTPVENLEPQQLQIETPETGEVAPEADDTAPQTAQPVET
KVSPQAEPEAAEKDAEEKTNGRRRRRRRSSASS
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgcctaagcaaattattattgcagagcagcatcagattgctgccgttttttgggaagac
caaatccaagaaattgtcgtatccaccggtgcccaacaggtcggtgacatctatctcggt
atcgtcgaaaacgtcattcccggcattgacgcggcctttgtcaacatcggtgacaccgaa
aaaaacggtttcatccacgtcagcgatctcggccccattcgactcagaaaaaattccagc
tcaatcaccgaactcctcgaaccccaacaaaaagccttggttcaggtgatgaaagaaccc
acgggaaacaaagggccacggctcacaggcaatattaccctccccggtcgctacgtcgtc
ctgatgccctacagcaaaggagttaacctttcccgccgcatcagtagtgatagcgaacgt
aaccgtctgcgggccctcgccgtgctgatgaaacctcccggcatgggacttttggtgcgg
actgaggccgaaggtaccgacgaagaagcgatcatcgaagatttagaactgctccaaaaa
cagtgggaagcgatccagcagcaggcaaactacggccgtcccccgaccctgatcaaccgc
gatgacgactttattcagcgggtgctgcgggacatgtacagcgatgaagtgaaccgcatc
gtggtggattctgccagcggtatgaaacgggtgaaaagccagctcatgaactgggaaggg
gggaaagcgcccgacggtttgttaattgatcatcaccgcgaaaagcaatcgattctggac
tatttccgggtgaatgcggccattcgtgaagccctcaagcccagggttgagttgccttct
gggggctacatcatcattgaacccaccgaagctttaactgtcattgacgtaaactctggt
tcttttactaaatccgccaccgcacgggaaacggtgctttggacgaactatgaagcggcc
acagaaattgcgcggcaactgcggttacgcaacattggtggggtaatcgtggtggatttc
atcgacatggattctcgccatgatcagttgaagttgctggagcattttacaagtattctc
aaggcggataaggcccgaccccagatcgcccagttgtctgaattgggtttggtagaactg
actcgcaaacggcagggtcaaaatatttatgaactgttcggtaagccctgcgcccactgt
aatggcctcggtcacttggtacatttacccggtgaagaggaaccagtaccactccagtta
aatattctgtcttctctctcgctccagggcggggcgcggacaccgggagaaagtcggcct
gtactgtctgggggacggcgcggcaccaccagccacggacgacggattacatcacgggtt
gctcggagcaagctgattaatgcagggaatacgcctgcggcagagccgttaaatctggtg
catcatcccgattatcaggaacaaagcagcaataataataatcgtcgtcgtcgccggcga
tcgccagaggtttcgagtaagccggtgctccgggacgaaaaagaaacccaagataatggt
ggcgatcgcccctctgctgagacgccaacaaaagaaaaaaaagaaacaaaaacgtcttcg
ccccaagacaacagcaatacgtcttcccgctatgaccgccgcgaacggagccgttaccgc
cgtgacgagcccaaagaaaccgtccaggtggaaatgacggagcaggaaaaaaatgtctat
gccctgattggggtatcccccctggtgcgtttagacgctgctgggaaaaaagacccccgc
tcaacgattatcgaaattgtgcgaccgggaagcgccaaagaaaccgatgccacttcggaa
aaggtaacaccagtcgaaaatttagagccgcaacaactccagattgagacccctgaaact
ggagaggtcgcccccgaagcagacgacacagctccccaaactgctcaacccgtagaaaca
aaagtttcaccccaggcggaaccggaagcagcagaaaaagacgctgaagaaaaaaccaat
ggccgtcgccgtcgccgtcgccgttcttccgccagtagttaa
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