Picosynechococcus sp. PCC 7002: SYNPCC7002_A1273
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Entry
SYNPCC7002_A1273 CDS
T00664
Name
(GenBank) conserved hypothetical protein TIGR00649
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
syp
Picosynechococcus sp. PCC 7002
Pathway
syp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SYNPCC7002_A1273
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syp03019
]
SYNPCC7002_A1273
Messenger RNA biogenesis [BR:
syp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SYNPCC7002_A1273
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
SipA
Motif
Other DBs
NCBI-ProteinID:
ACA99270
LinkDB
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Position
complement(1318770..1320596)
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AA seq
608 aa
AA seq
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MNKSKPQPTTRRRTRTSQKQTTKPENLNPQDSIKIIPLGGLHEIGKNTCVFEYDDEIVLL
DAGLAFPTDGMHGVNIVLPDTTYLRENRHKIKGMIVTHGHEDHIGGISHHLKQFDIPVIY
GPRLAMSLLSDKLDEAGVSDRTKLHSVMPRDMVRIGKNFLVEYIRNTHSIADSFTVAIHT
PIGVIIHTGDFKVDFTPVDGEQFDFQRLAEHGEKGVLCLLSDSTNAEVPGRTPSEASVKP
NLDRIFGQAQGRLFVTTFASSVHRVSIILELAQKHNRKVAVVGRSMLNVISHARNLGYMK
CLDELFIPLRQLKSMKDEDVLILTTGSQGETLSAMTRISHDAHRHIKIKEGDTVVFSANP
IPGNTIAVVNTIDRLMMRGAKVIYGKGEGIHVSGHGAQDDHKLMLALTKPKFFIPFHGEH
RMLVKHAQTAQSMGVPEENIVIIDNGDIVELTENSIGVTGKVPSGIELVDRSGIVHDSVL
QERQQLAEEGVITVAVAIAQDGNLIAPPEIHLRGVVTAANNKLLHQLIQRNVENVLEDRL
AEYKEHGKRSNEDIDWTDIRLEIEASLQRLARRELQGEPLVVFLMQVSEQTAVRTQRRRR
RPTASLAS
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagagcaaaccccaacccacaacccgtagaagaacccgcaccagccaaaaacaa
acgacaaagccagaaaatctcaacccccaggacagtattaaaattattcccctgggtggt
ctccatgaaattggtaaaaacacctgtgtttttgagtatgacgatgaaatcgtgctgctc
gatgcgggcctagcctttccgacggatgggatgcatggggtcaatattgttctgccagac
acaacctatctccgggaaaaccgccacaaaattaaggggatgattgtcacccacggccac
gaagatcacattggtggtatttcccatcacctcaagcagtttgatattcccgtcatctat
ggcccccgcctagctatgtctctgttgtccgacaaactagatgaagcaggcgtaagcgat
cgcaccaaactccacagcgtcatgccacgggacatggtgcgtattggtaaaaatttcctc
gtagaatacatccgcaatactcactccattgccgatagctttaccgtggcgatccacacg
cccattggggtgatcattcacacaggggacttcaaagtagactttacccctgttgacggt
gaacagtttgattttcagcggctcgctgagcatggcgaaaaaggtgttctctgtctttta
agtgattcgacgaacgccgaagttcccggtcgcaccccttcggaagcctcagtgaagccg
aatttagacagaatctttggtcaggcccaaggacgactctttgtgacgacctttgcctct
tctgtccaccgggtcagcattattttagaactggcgcaaaaacacaatcgtaaggtggct
gtggtgggccgttccatgctaaacgtcatttcccatgcccgcaatttaggctacatgaaa
tgtttggatgagctgtttattcccctgcggcagctgaaaagcatgaaggatgaggatgtt
ttgatcctgacaacgggctcccaaggtgagaccttatcggccatgacacggatctcccac
gatgcccaccgccacatcaaaattaaggaaggggatacggtggtcttttcggccaatccg
atccctgggaatacgatcgccgtggtcaataccattgatcgtctgatgatgcgcggcgcg
aaagtcatctacggtaaaggggaaggaatccacgtttctggtcacggcgcccaagatgat
cacaagttgatgttggccttgacgaagccgaagttctttattccgttccacggggaacac
cggatgttggtgaagcacgcccaaacggcccaatcgatgggggtaccggaagaaaatatt
gtgattatcgataacggtgacattgtggaactcacagaaaattccattggtgttaccggg
aaagtgccttcgggaattgaattagtagaccgttctggtattgtccatgattcggtactc
caggaacggcaacagttggccgaggaaggggtgattacggtggccgtggcgatcgcccaa
gacggtaatctaattgcgccaccagaaattcatctccggggtgtggttaccgcagcgaac
aataagttactccaccagttaatccagcggaatgtcgaaaatgtgttggaagaccgcctc
gcagagtacaaagaacatggcaagcgcagcaacgaagacattgactggactgacattcgc
ctagagattgaagcatccctacaacgccttgcccgtcgagaattacaaggggaacccctc
gtggtctttttgatgcaggtcagcgaacagactgccgttagaacccagcgccgtcgtcgt
cgtcccacagcatcccttgcttcctaa
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