Picosynechococcus sp. PCC 7002: SYNPCC7002_A1543
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Entry
SYNPCC7002_A1543 CDS
T00664
Name
(GenBank) exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
syp
Picosynechococcus sp. PCC 7002
Pathway
syp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SYNPCC7002_A1543
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syp03019
]
SYNPCC7002_A1543
03016 Transfer RNA biogenesis [BR:
syp03016
]
SYNPCC7002_A1543
Enzymes [BR:
syp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SYNPCC7002_A1543
Messenger RNA biogenesis [BR:
syp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SYNPCC7002_A1543
Transfer RNA biogenesis [BR:
syp03016
]
Prokaryotic type
tRNA degradation factors
SYNPCC7002_A1543
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
RNase_R_N
OB_RNB
CSD2
S1
OB_Dis3
OB_PDCD11
OB_HELZ2
Motif
Other DBs
NCBI-ProteinID:
ACA99534
LinkDB
All DBs
Position
complement(1627809..1630082)
Genome browser
AA seq
757 aa
AA seq
DB search
MDFSIATLLSFFTDDKLVAGKFLEKKLECRSEEDTEQLQIILDALERSNILVKERGKYRR
VPEADVVEAKLRCSSKGFCFAIQDSEDADDIYIRESYLSNAWNGDRVLVKIIKEGTRRRS
PEGVVRLILERANPSLLARVVQKDEGFRAVPLDDRLLFELELQDETDRLQQAIDHLVHVS
VVQYPIAQYLPQGSVTKVLGSDAEAAADTDIVCCKHDLLRQFPEEVLAAVKDIPTKLTKK
MLAKRRDFRDQLTITIEDEIHLTPENQAFIENAFTLQKTEAGQWQLGIHLADVAEFVPAQ
GVLDRWAKKHGTAVFLGQMTIPLFPPEFKEKVELRPGGDRLTMSILLTFDDQGNVAEFEI
TPSVIRVDQSLSYQKIQHLLSSGETAEAELADVATLLNDLIFNLSPLVKAQRLQRGGFQI
SLPEVTSAFKDEGRFGTMIVSPSLPVRSLLAEVMILAGRAVAQHMLALELPAIYCYQANP
DFESLENLIKLGNNLNLKLKLESEEELLPHDYQHFIQEFSQTDMTKILNYLLQETLDVPR
YGAHPHPHFGLAYRDGYSRVCAPGQRYGDLVMQRILKLIFSEGRDRRSSRVKVGVNLGSS
TCHNQVNWKVLPTPIQTELEETIASLILQLNDQEKVADDAEKDLQGLQKAEKMKAHTGHT
FKGLITGVQSYGFFVEIEDLLVEGLVHVSSLKDDWYEYRARHSCLVGRKNRTAYRLGNTV
DVEVKSVDYYRQQIDLAIAKNTNSDPDGAAAENWEEE
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atggatttttcaatcgccacactgctgtctttctttacagatgacaaattggttgccggt
aaattcctcgaaaagaaattagagtgtcgctctgaggaagatacagaacaactccagatt
attcttgatgccctggagcgctcgaatattttggtgaaggaacggggcaaatatcgccgg
gtgccggaagcggatgtggtcgaggcaaagctacggtgttcgagtaagggtttctgtttt
gcgatccaggattctgaggatgctgatgatatttacattcgtgaaagttatctcagcaat
gcttggaatggcgatcgcgttttggtcaagattattaaagaaggaacgcggcggcgatcg
ccagagggagtagtccgtttaattttagaacgggccaatccttccctcctagcgcgggtg
gtccaaaaagatgaaggcttccgagcagtgcccctcgacgatcgcctcctgtttgaactt
gaactccaggacgaaacagatcggctccagcaggccattgatcacctcgtccatgtttcg
gtggtgcaatatcccatcgcccagtacctcccccaggggtctgtcaccaaggtgttgggg
agtgatgccgaggccgccgctgacaccgatattgtctgttgtaaacatgatttactgcgc
caatttcccgaggaggttttggctgccgttaaggacattcccacaaaactaacaaaaaaa
atgctcgccaagcggcgggattttcgcgaccaattgaccatcaccatcgaggatgaaatt
cacctcaccccagaaaaccaagccttcattgaaaatgcatttacactgcaaaaaaccgag
gctggacagtggcaactgggcatccacttagcggacgtggcagaatttgtcccggcccag
ggagtcctggatcggtgggcgaaaaaacatggtacggcggtgtttctcggtcaaatgacc
attccactatttccaccagaatttaaggaaaaggtggagcttcgtcctgggggcgatcgc
ctgacgatgtccattctcctcacctttgatgatcaggggaacgtggcagaatttgaaatt
acccccagtgtgatccgcgttgaccagagcctaagttaccaaaagattcagcacctcctc
agtagtggggaaaccgcagaggctgaactggccgatgtcgcaactctgctgaatgattta
atttttaacctcagtcctttagttaaagcccagcgcctgcaacggggcggtttccagatt
tctctacccgaagtaacttctgcttttaaagatgaagggcgtttcgggacgatgattgtt
tcaccgagcttgccggtgcggtctctcttggcagaggtgatgatcctagcgggtcgagcc
gtagcccaacatatgctggccctagaactaccagccatctattgctaccaagcgaatcct
gattttgagagccttgaaaatctcattaagttgggcaacaatctaaacctcaagctcaag
ctcgaatcggaagaagagctgttaccccacgattatcagcactttatccaagagttcagc
cagacggacatgacaaagatcctgaactatctacttcaggaaaccctcgatgttccccgc
tatggtgcccatccccacccccattttggcttggcctaccgggacggttacagtcgcgtg
tgtgcgccgggacaacgctatggtgacttggtgatgcagcgcattttaaaactcattttc
tctgaggggcgcgatcgccgttcgagtcgcgtcaaggtcggggttaacctcggcagcagc
acttgtcataaccaggtgaactggaaagtgctaccaacgccgatccaaacggaattagaa
gaaaccattgccagcctaattttgcaactcaacgatcaagaaaaggtggccgatgacgcc
gaaaaagatctccagggactccaaaaggctgaaaagatgaaggcccacacggggcacact
tttaagggattgatcaccggggtgcagtcctatggtttctttgtggaaatcgaggatctg
ctcgtggaaggtcttgtccatgtcagctccctcaaggatgactggtacgaatatcgcgcc
cgacacagttgtctagtgggtcggaaaaatcgtactgcctatcgcctcggcaataccgtc
gatgtggaagtgaagagtgtcgattattatcggcaacagattgacctggcgatcgccaaa
aataccaattcagacccagatggcgcggctgcggaaaattgggaagaagaataa
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