Picosynechococcus sp. PCC 7002: SYNPCC7002_A2014
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Entry
SYNPCC7002_A2014 CDS
T00664
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
syp
Picosynechococcus sp. PCC 7002
Brite
KEGG Orthology (KO) [BR:
syp00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SYNPCC7002_A2014 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
syp03021
]
SYNPCC7002_A2014 (rpoD)
Transcription machinery [BR:
syp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SYNPCC7002_A2014 (rpoD)
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
ACB00001
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Position
2091756..2092883
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AA seq
375 aa
AA seq
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MTQATNPVLDQTRNEGDIDYSALAEAQIKEGTDYVELTLPTKKSRKAKTSRRKETATKKK
PYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERMREQLTEHESRVPTDKEWAE
AAGMPLKDFRRRLFHGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAA
EKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQELGR
KPTEEEIAERMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDQVSK
SLLREDLENVLDTLSARERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRK
LRHPNRNSILKEYIR
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
atgacccaagcgacgaaccccgtactggatcagactcggaatgagggtgatattgattac
agtgcccttgcggaagcgcaaattaaagaaggtaccgactatgtagaacttaccctcccc
acgaaaaaaagtcggaaagcaaaaaccagtcgtcgtaaggaaactgccaccaagaaaaaa
ccctacaccgaagactcgattcggatttacctccaagaaattggccggattcgtctgctg
cgggctgaagaagaaattgagctggcccggaaaattgctgatttgctcgaactagagcgg
atgcgggaacaactcaccgagcatgagtctcgcgttcctacggacaaagagtgggccgaa
gccgctgggatgcccctcaaagattttcggcgtcgcttgttccatggtcgccgtgccaaa
gacaaaatggtgcaatcaaacctccgtctggtggtctctattgcgaaaaaatatatgaac
cgcggcctttcgtttcaggacttgatccaagagggttctttgggtctgatccgtgccgcc
gaaaagtttgaccacgaaaaaggttataagttctctacctacgcgacctggtggattcgt
caggctattacgcgggcgatcgccgatcaatcccggaccattcgtctgcctgttcacctc
tacgaaaccatttcccgcatcaaaaaaaccaccaagattctttcccaagaattaggccgc
aaacccaccgaggaagagattgctgagcgcatggaaatgaccatcgaaaaactgcgcttc
atcgccaagtctgcccagttaccgatttccctcgaaacgccgattggtaaagaagaagat
tctcgcttgggtgacttcatcgaagccgatggggaaactccagaagatcaagtctccaag
agcctcctgcgggaagatctagaaaacgtgcttgataccctcagtgcccgtgagcgtgat
gttctccgtctccgttatggcttggatgatggccgcatgaaaaccctcgaagaaattggc
caaatttttaacgtaacccgtgaacggattcgccagatcgaagcaaaagcgctgcgtaaa
ctgcgtcacccgaaccgcaacagcatcctgaaagaatatatccgctag
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