Picosynechococcus sp. PCC 7002: SYNPCC7002_A2044
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Entry
SYNPCC7002_A2044 CDS
T00664
Symbol
rpoC1
Name
(GenBank) DNA-directed RNA polymerase, gamma subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
syp
Picosynechococcus sp. PCC 7002
Pathway
syp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
syp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SYNPCC7002_A2044 (rpoC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
syp03021
]
SYNPCC7002_A2044 (rpoC1)
03400 DNA repair and recombination proteins [BR:
syp03400
]
SYNPCC7002_A2044 (rpoC1)
Enzymes [BR:
syp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SYNPCC7002_A2044 (rpoC1)
Transcription machinery [BR:
syp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SYNPCC7002_A2044 (rpoC1)
DNA repair and recombination proteins [BR:
syp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SYNPCC7002_A2044 (rpoC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Cas9-BH
Motif
Other DBs
NCBI-ProteinID:
ACB00031
UniProt:
Q55085
LinkDB
All DBs
Position
complement(2128434..2130344)
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AA seq
636 aa
AA seq
DB search
MKSQQEQHFDYVKIGIASPERVRQWGERTLPNGQTVGEVTKPETINYRTLKPEMDGLFCE
RIFGPAKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGYIKLAAAVTHVWYLKG
IPSYLSILLDMALRDVEQIVYFNAYVVLDPGNATNLSYKQLLTEDQWLEIEEQLYSEDSQ
LEDVEVGIGAEAIERLLQELELEAVAEELREGIANSKGQKRAKLIKRLRVIDNFIATGAR
PEWMVLNSIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVR
NEKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRS
VIVVGPKLKIYQCGLPREMAIELFQPFVIQRLIKSTIVSNIKAAKKLIQRGDESVWDVLA
EVITGHPVLLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLS
LEAQAEARLLMLACHNILSPATGKPIVAPSQDMVLGCYYLTAENPGAQRGAGRYFSSMDD
ALRAYEQGDVDLHAYVWLRYLGDVETNEADDRVLESETLEDGSILKIYRERKVRETAEGE
MISQFIRTTPGRIIYNKTIQDALDLTERTLPEGLPV
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagtcaacaagagcaacatttcgattacgtcaaaattggtattgcttctcctgaa
cgggtacgccagtggggagagcggactttaccaaatggtcaaaccgtcggcgaggttaca
aaaccagaaactattaactaccggacgttaaaaccggaaatggatggtttattttgtgag
cggatttttggcccggccaaggactgggaatgccactgtggtaaatacaagcgggttaga
caccggggaattgtctgtgagcgttgtggcgtagaggtcactgaatcccgggtgcgtcgt
catcgcatggggtacatcaagctcgctgcggcagttacccacgtttggtatctcaagggg
atccccagctacctcagcattttgctggatatggcactgcgggatgtggagcagattgtt
tatttcaatgcctatgtcgtcctcgatccgggtaatgcgactaacctcagctataagcaa
ctattgacggaagatcagtggttagaaattgaagagcaactctacagcgaagattctcag
ttagaggatgtggaagttggcattggggctgaagcgattgagcgtttgttgcaagagctt
gagttagaggcggttgctgaggaactacgggaaggcattgctaattctaaaggtcaaaaa
cgggcgaagttaattaaacgtttgcgcgttattgataactttattgcgactggggcacgc
cctgaatggatggttctgaacagtatccctgtcattccaccggatctgcgcccgatggtg
cagctcgatgggggccgctttgccacctccgatttgaatgatctttatcgccgcgttatc
aatcgaaacaaccgtctcgctcgattacaagaaattctggcaccggaaattatcgtccgc
aacgaaaaacggatgttgcaagaggcggtggatgcgctaattgacaatggccgtcgtggt
cggacagttgtcggtgcaaataaccgtcccctcaagtctttatcggacattattgaaggg
aagcaaggtcgtttccggcaaaacctccttgggaaacgggttgactattctggtcgttct
gtcatcgtggttgggccaaagctaaaaatttatcagtgtggtctgccccgtgagatggcc
attgaactgttccagccttttgtaattcagcgactgattaagagcactattgtcagcaat
attaaggcggcgaaaaagctgattcaacggggggatgaaagtgtttgggatgtgctcgct
gaagtaattacgggtcaccctgtactactcaaccgggcaccaacgctacaccgactaggg
attcaggcttttgaaccgattctcgtggaaggtcgcgcgattcagttgcacccgttggtt
tgtcctgcgtttaacgctgactttgatggcgaccaaatggcggtgcacgtgcctttgtct
ttggaggcccaagctgaggctcgtctgttgatgctggcttgtcataatattctttcgccc
gctacgggtaaacccattgtggctccttcccaggatatggttttaggttgttattatttg
acggcggaaaatccaggggcacagcggggtgcgggacgctactttagcagtatggatgat
gcgttgcgggcctatgagcaaggggatgtggatttgcatgcctatgtatggttgcgctac
ctcggcgatgttgagaccaatgaggcggatgatcgggtgttggaatctgaaacgttagag
gatggttctattttgaaaatttaccgtgaacggaaggttcgggaaacggcagagggtgaa
atgattagtcagtttatccgcacaacgccgggacgaatcatctacaacaagacgatccaa
gatgcccttgatttaaccgagcggacgctcccagaaggactacctgtataa
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