Synechocystis sp. PCC 6803 PCC-P: SYNPCCP_1134
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Entry
SYNPCCP_1134 CDS
T01891
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
syq
Synechocystis sp. PCC 6803 PCC-P
Brite
KEGG Orthology (KO) [BR:
syq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
syq03021
]
SYNPCCP_1134 (rpoD)
Transcription machinery [BR:
syq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SYNPCCP_1134 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
HTH_11
HTH_10
HTH_24
MerR_1
MerR
DUF3791
HTH_71
HTH_5
Motif
Other DBs
NCBI-ProteinID:
BAL35220
LinkDB
All DBs
Position
complement(1253855..1254811)
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AA seq
318 aa
AA seq
DB search
MTARTSPDSVRAYLREIGRVPLLTHEEEIVYAKQIQQVVSLNEIKKSLAEGKDGEPVSPS
EWAKAADLSIRELEKAIKEGERAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGM
QRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQ
EKGRAASIAELAEHLELTPKQVREYLERSRHPLSLDLRVGDNQDTELGDLLEDDGPLPED
FATYASLQLDLDSLMAELTPQQREVLILRFGLNDGQPLTLASIGSMLSISRERVRQIERE
ALNKLRKRKSMIQEYLAS
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atgactgccagaaccagccccgattccgtccgtgcctatctcagagaaattggtcgtgtg
cccctgctcacccatgaggaagagattgtttatgctaagcaaatccaacaggttgttagc
ctcaacgaaatcaagaagtctttggccgaaggcaaggatggcgagccggtttcccccagc
gagtgggctaaggcggccgatttgtccattcgagaattagaaaaagccatcaaggaaggg
gaacgggccaagcgcaaaatggtggaggctaacctccggctggtggtatctgtcgccaaa
aaatatctcaagcgtaatctagacctacttgacctcatccaagagggcaccattggtatg
caacggggggtagagaagtttgaccccaccaagggttatcggttttccacctatgcctat
tggtggatccgccaggccatcaccagggcgatcgccgaaaagagccgcaccatccgttta
ccaatccacattacggaaaagttaaacaaaattaaaaaagcccaaagacaactttcccag
gaaaagggtcgggccgcttccattgcggaattggcggaacatctagaattaactcccaag
caagtgcgggaatatttggagcgctctcgccatcccctttccttggatttacgggtgggg
gacaaccaagatactgagttaggggatttgttggaagacgacggtcctttaccagaggat
tttgccacctatgcctccctacagttggatctcgatagcctgatggcggaattaacgccc
caacaacgggaagttctcattctccgctttggcctcaatgatggccaacccctaaccttg
gcgagcattggctccatgctcagcatcagtcgggaacgggtgcggcagattgagcgggaa
gccctaaataaattacgcaaacgcaagtccatgatccaggaatatttagctagctaa
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