Synechococcus sp. RCC307: SynRCC307_1226
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Entry
SynRCC307_1226 CDS
T00523
Name
(GenBank) Exoribonuclease R/ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
syr
Synechococcus sp. RCC307
Brite
KEGG Orthology (KO) [BR:
syr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
syr03016
]
SynRCC307_1226
Enzymes [BR:
syr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SynRCC307_1226
Transfer RNA biogenesis [BR:
syr03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SynRCC307_1226
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
RNase_II_C_S1
HTH_RNase_II
Motif
Other DBs
NCBI-ProteinID:
CAK28129
UniProt:
A5GTC0
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All DBs
Position
1085412..1087379
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AA seq
655 aa
AA seq
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MGVCDDRKQPRLALLEALSNGRASLRYAAASGQQQRPVPLKQVELIVPLSASSSSDLAHA
LSATSSSSTELALAWMESQQQQSPAQSYSLASLGQLLRNDPTPQQLAALWLSLQSPQDLW
RWKAGVATARSSSELRQLRRSRRSQQLEQAGRQGLLDAIAARRPITALVGSKPAQELLRG
LKQLAGAEKPEEVSLAPELHQALQRAGYDGSAQVLQQVLVDLGLLQPGQPLRLLGSAWES
NSEVELPTAQIDPQRRDLTHLSCFSIDSASTQEVDDAIGLERRDGDLWIWVHIADPHQWL
EPGDRLDLEAQRRGSTLYLSGGAMPMFPMAVARDCMSLRPMRRCGALSVGVLLDADGAIT
AVKPCRSWVKVSYGLTYEDADDLIELAPPEDPDLAELAELLKRRTAWREQQGALLMEQAE
GRLFRNGAAELALEITEPGLARSCVSEAMILAGAAMAEWSSQHELAMPFRVQAGSSQDNA
EANQWPQGPVRWAQQRRGLSRSRLQSKAEPHGSLGLPMYLQWTSPIRRYGDLLAHRQWLQ
FSGHLEGEPLDAEAIGALLQRLDQGQREASLIARQDQRMALLEWLAGPIPQWPQPATLLS
WLREDNGIALVRLEAWAMELPAQIEPGLGLGDQLFIQLERVDPASDLLRLKGIAG
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
gtgggtgtttgcgacgaccgcaaacaaccccgcctggctctcctcgaagccctgtccaac
ggcagggcttcgttgcgttatgccgccgctagtggccagcagcagcgccctgtgccgctg
aagcaggttgaactgatcgttcccctcagtgccagcagcagcagcgacctggcccatgcc
ctgtccgccaccagcagcagctccactgaactggccctggcctggatggagtcgcagcaa
cagcaatcaccggctcagagctactcgctggcgtctttgggtcaactgctgcgcaacgac
cccacaccacaacagctggcggctctgtggctgtccttacagagcccgcaagatttgtgg
cgttggaaagcgggggtggccacagcccgcagcagctcagagctgcggcaactgcgccgc
agccgccgatcccagcaactcgagcaagcaggccggcaagggctgctcgatgcgatagca
gcccgcagaccaatcacggccctcgtgggttcgaagccggcccaggagcttttgcggggg
ctcaagcaactcgctggcgctgagaagccagaggaggtgagcctggcccctgaactccac
caagccttgcaacgggctggatacgacggttcagcgcaggtgttgcagcaggtgttggtg
gacctgggtttgctgcaaccagggcagcccttgcggttgcttggatcagcatgggagagc
aactccgaggtggagttgccaacagcccagatcgatccacagcgtagagatctgacccat
ttgagctgtttcagcatcgacagtgcctccacccaagaggtggatgacgccattggattg
gagcgccgcgacggagacctctggatttgggtccacattgctgatccccatcaatggctg
gagccgggagatcgtctggatcttgaggcccagcgccggggctcaacgctttatctcagt
ggcggggccatgccgatgttcccgatggccgtggcgcgtgactgcatgagcttgcggccc
atgcgccgctgcggcgccttgagtgtgggcgtcctgctcgatgccgacggcgccatcacc
gcggtcaaaccttgccgcagttgggtgaaggtctcctatgggctcacctatgaggatgcc
gatgacttaatcgagctggctccgcctgaggatcctgatctggcggaattggcggagctc
ctcaaacgccgcacagcctggcgcgaacaacagggagcgctgctgatggagcaggccgaa
ggtcgtttgttccgcaacggcgcggctgaactcgcgctcgagatcaccgaacccggccta
gcccgctcctgcgtcagcgaagccatgattctcgctggtgcagccatggccgaatggtcg
agccaacacgagttggcgatgccctttcgggtgcaagccggatccagtcaggacaatgca
gaggccaaccaatggccccaaggcccagtgcgttgggcccagcagcgacgggggctgagc
cgcagccgcttgcaaagcaaagctgagccccatggctcactgggtctgccgatgtacctg
cagtggacgtccccgatccgccgctacggcgatttattggctcaccgccagtggttgcaa
ttcagtggacaccttgagggcgaaccgctcgacgctgaagccatcggcgcgctactgcag
cgcttggatcaaggtcaacgggaggcgagtttgattgcacggcaagaccaacgcatggcc
ctgttggaatggctggccggacctatcccgcaatggccgcagccagcgaccctgctgagc
tggctgcgggaagacaacggcatcgctctggtgcggttggaggcctgggccatggagttg
ccggcccaaattgaacccggactggggcttggcgatcagctcttcatccagctggagcgg
gttgatcccgccagcgacctgctgcgtcttaagggcatagccggttaa
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