Synechococcus sp. RCC307: SynRCC307_1325
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Entry
SynRCC307_1325 CDS
T00523
Symbol
dnaE
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
syr
Synechococcus sp. RCC307
Pathway
syr03030
DNA replication
syr03430
Mismatch repair
syr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
syr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SynRCC307_1325 (dnaE)
03430 Mismatch repair
SynRCC307_1325 (dnaE)
03440 Homologous recombination
SynRCC307_1325 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
syr03032
]
SynRCC307_1325 (dnaE)
03400 DNA repair and recombination proteins [BR:
syr03400
]
SynRCC307_1325 (dnaE)
Enzymes [BR:
syr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SynRCC307_1325 (dnaE)
DNA replication proteins [BR:
syr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SynRCC307_1325 (dnaE)
DNA repair and recombination proteins [BR:
syr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SynRCC307_1325 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
CAK28228
UniProt:
A5GTL9
LinkDB
All DBs
Position
complement(1172612..1176151)
Genome browser
AA seq
1179 aa
AA seq
DB search
MVAGLSFVPLHNHSDYSLLDGATQLPAMVQRAVDLGMPAVALTDHGVMYGAIELLKLCSK
AGIKPIIGNEMYVVNGSIDDPQPKKERRYHLVVLAKNNVGYRNLVKLTSISHLRGMRGRG
IFARACIDKHLLQQYSEGLIVATACLGGEIPQAILRGRMDVARQVASWYRDLLGDDFYLE
IQDHGSPEDRIVNTGLLTLSRELGIQLIATNDAHYLSRDDVEAHDALLCVLTGKLLSDEK
RLRYTGTEYIKSREEMERLFVDHLPAEVVQQALDNTMSVAEKVEDYDILGRYQMPRFPIP
EGHTPVSYLHEVTEQGLRQRLQLDADSSIDELYGERMRHELKIMEQMGFPTYFLVVWDYI
RFARDNGIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMPDIDTDFCI
ARRSEVIDYVTERYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVVRG
KPAKLAQMISEDSPEPEFRQKYESDPQVKRWVDMARRIEGTNKTFGVHAAGVVIAADPLD
ELVPLQRNNDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIEKTLELVSAEHGDRPDPDQ
LPADDPETYQLLARGDLEGIFQLESTGMRQIVRDLKPSSLEDISSILALYRPGPLDAGLI
PKFINRKHGREAIEFADAKLQPILQETYGIMVYQEQIMRIAQDLAGYSLGEADLLRRAMG
KKKVSEMQKHRGIFVEGASQRGVDAKVADELFDQMVLFAEYCFNKSHSTAYGAVTYQTAY
LKAHYPVAYMAALLTVNAGVTEKVQRYIANSNAMGIAVLPPDVNRSGIDFTPVGQRILFG
LSAVRNLGDGAIHALIASRQSDGPFTSLAELCDRMAGIGQLNRRSLESLIHSGALDALEP
DGNRAQLMADLDLLLDWATARARDRASGQGNLLDLLGGGSEAEAASATPASAPKAASVPD
YAPTEKLRLEKELVGFYLSDHPLKQLQDTRRLLMPVGLGSLSEQSDRQRVSTLVMVPEMR
VVTTRKGDRMAILQIEDLTGSAEAVVFPKTYARLSDHLMVDARLLLWGQVDRRDDRVQLI
VDDVSLIDQLDLVVVRLDGPQAADITVQHQLRECLQQHRIDPEILGSRVPVVAEVQAANQ
RCFVRLGHQFCVNDAQAAAASLTAARFDVQLRHCAAAGC
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
gtggttgcaggcttgagcttcgttcctctgcataaccacagcgattacagcctcctcgac
ggggcgacccagctgcctgcaatggtgcagcgggccgttgacctcggcatgccagcggtg
gccctcaccgatcacggggtgatgtatggcgccatcgagctgctgaagctttgctcgaaa
gcgggcatcaagccgatcattggcaatgagatgtatgtcgtcaacggcagcatcgatgac
ccccagccgaagaaagagcgtcgctatcacctcgtggtgctggccaaaaacaacgttggc
taccgcaacctcgtcaagctcaccagcatcagccatctgcgcggaatgcgtggtcgcggc
atctttgcgcgcgcttgcatcgataagcacctgctgcagcaatacagcgaaggcctgatt
gtggcgacagcctgcttgggcggtgaaattccccaagcgattctgcgcggccgcatggat
gtggcccgtcaggtggccagctggtatcgcgacctactgggagatgacttctacctcgag
attcaagaccacggctcaccggaagaccgcattgtcaacaccggcctgctgaccctctcg
cgggagctcggcatccaactgattgccaccaacgatgcccactacctcagtcgcgatgac
gttgaagcccacgacgctctgctgtgcgtgctgacgggcaagttgctcagtgatgagaaa
cgtctgcggtacaccggaaccgaatacatcaaaagtcgcgaggagatggagcgtctcttc
gttgaccacctgccggctgaggtggtgcagcaggcgctcgacaacaccatgtcggttgcc
gaaaaggtcgaggactacgacatcctcggccgttatcagatgccgcgctttcccattccg
gagggtcatacgccggtgtcttacctgcacgaagtcaccgagcaagggctgcgtcagcgc
ctgcagctcgatgccgattcgagcatcgatgagctgtacggcgagcgtatgcgccatgaa
ctcaaaatcatggagcagatgggattccccacctacttcctggtggtttgggattacatc
cgctttgcccgtgacaacggcatccccgtggggcccggccgtggttcggccgctggatcc
ttggtcgcctatgccctcggcatcaccaacatcgatccggtcagcaatggattgctgttc
gagcgcttcttgaatccagagcgcaaatcgatgcctgatatcgacaccgacttctgcatt
gctcggcgcagtgaggtgatcgactacgtcactgagcgctacggcgacgacaaggtggcg
cagatcatcaccttcaaccgcatgacctccaaggccgtgctgaaggatgtggcgcgggtg
ctggatattccctatggcgatgccgaccgtctggcgaagttaattccagtggtgcgcggc
aagcccgccaaattggcgcagatgatttcagaggattcaccggagcccgagttccgtcag
aagtatgaaagcgatccacaggtgaagcgctgggtcgacatggcccgccgaatcgagggc
accaacaagacatttggtgtgcatgccgctggtgtggtgattgccgctgaccccctcgat
gaattagttcccctgcagcgcaacaacgacgggcaggtgatcacccagtacttcatggaa
gacgtggaatccatggggctgctgaagatggatttcctcggcctcaagaacctgaccatg
atcgagaagaccctcgaactggtcagtgccgagcatggggatcgtcccgaccccgaccag
cttcctgccgatgacccggagacctaccagctcttggcgcgcggcgatcttgagggaatc
ttccagctggaatccactggcatgcgccagatcgtgcgcgacctcaagccctcgtcgctg
gaggacatctcttcgatcttggccctctacaggcctggccccttggatgccggcttgatc
cccaaattcattaaccgcaagcatggccgcgaggccattgaatttgccgacgccaagctg
cagccgatcctgcaggagacctacgggatcatggtgtatcaggagcagatcatgcgaatt
gcgcaggatctggcgggctactcactcggtgaagccgacctgctgcgccgggccatgggc
aaaaagaaagtctctgagatgcagaagcatcgcggcatttttgttgagggggccagtcaa
cggggcgttgacgccaaggtggccgatgagctgtttgatcagatggtgctctttgcggag
tactgcttcaacaagagccattccacggcctatggcgccgtgacctatcagacggcctac
ctgaaggctcactaccccgtggcctacatggccgcgctgctgacggtgaacgccggcgtg
acggagaaagtccagcgctacatcgccaacagcaacgccatgggcatcgcggtgttgccc
cctgatgtcaaccgttctggtatcgacttcacgcccgtggggcaacgcattctctttggc
ctctctgcggttcgaaaccttggtgatggtgccatccatgccctgatcgcctcacgccag
agcgatggaccgttcacatcgctggctgaactttgtgatcgcatggcgggcattggccag
ctcaaccggcgctcgctggaatcgttgatccatagcggcgctctcgatgccttggagccc
gatggcaaccgggcgcagttgatggccgatctggatctgctgcttgattgggccacagcc
cgggcccgagatcgcgccagcggccagggcaatctgctcgatctgcttggtggaggatcc
gaagctgaggccgcaagtgcaacgccggcttcggctccgaaagcagcctccgtgcccgac
tacgcgcccacggagaaattgcgtttagagaaggagctggtgggtttctatctctccgat
cacccgctcaagcaactgcaagacacccgacggctgctgatgcccgttggtctgggcagc
ctgtctgagcagagcgatcggcaacgggtgtccaccctggtgatggtgcctgagatgcgt
gtggtgaccacccgcaagggcgatcgcatggcgatcttgcaaatcgaagacctcaccggc
agtgctgaagccgtggtgttccccaaaacctatgcccgcctcagcgaccatttgatggtg
gacgcccgattgctgctctgggggcaggtggaccgccgcgatgatcgggtgcaactgatc
gttgacgacgtttcactgatcgatcaactggatttggtggtggtgcgactcgatggcccg
caagccgccgacatcaccgtgcagcaccagttgcgtgagtgcttgcagcagcaccgcatc
gatcctgaaatcttgggcagccgagtgccggtggtggctgaggtgcaagccgccaaccaa
cgttgctttgtgcgtttagggcatcagttctgcgtgaacgatgcccaagcggctgccgcc
agccttacggctgctcgcttcgacgtgcaactgcgccattgcgcagccgctggatgttga
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