Synechococcus sp. RCC307: SynRCC307_1556
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Entry
SynRCC307_1556 CDS
T00523
Symbol
recB
Name
(GenBank) Exodeoxyribonuclease V beta chain
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
syr
Synechococcus sp. RCC307
Pathway
syr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
syr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SynRCC307_1556 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
syr03400
]
SynRCC307_1556 (recB)
Enzymes [BR:
syr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
SynRCC307_1556 (recB)
DNA repair and recombination proteins [BR:
syr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SynRCC307_1556 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
PDDEXK_1
UvrD_C_2
AAA_30
DEAD
Motif
Other DBs
NCBI-ProteinID:
CAK28459
LinkDB
All DBs
Position
1371567..1375136
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AA seq
1189 aa
AA seq
DB search
MIEPLDLNGPLTGGTVVLEASAGTGKTYALSHRVLREVGENGRAIDQILVVTFTRAAAAE
IRRRIRTRLEEASTVLAYRLANDNRLASDPTLDELISRWAASPQGVEVLLNLLQAIDRID
LAPITTIHGFIQRLIQDNGTLLGLDPQRRLREGGRSLLQELVNDWRRSVLSPAPAPWQAW
VQSHSDLSLDGLMKLAQLVDDDRDMLLPEPLDTGATAVDGWQQRHERFERLLASDGISTG
EAMQQLCKGTGNKSPAGALLGKTKLAQLPDLIAIARDRNDIKTYRKLVQAFSTSQLKRVL
ADPDQAPSSGLHRAAEQLCFEPIEQLLTDLVHALRQGAWQRRQLKQEMSFGDLLERVDPA
RLSPPVLAGLKQWRQQQLSCCLIDEFQDTDPIQWRLFAALFDGEAPLTLIGDPKQAIYRF
RGGDIRTYRSAVSTPERQRFSLDTNRRSDPALLSVLNRLFAGEGSFGSPTIDYRMVQAPE
HASPSRLRCADGSPAPPVRMRWLGEADGGKPLKLGELRDSLPQRVCDDLQRTLSSGMELQ
QGDGWRALHPGDLAVLVGRNREAVALQRELQRRGIPARIGRGGDLWQSPEAASLSLWLES
SERQGDRRAAAALALSSVGGFLAAELSGWSPSDWGAWLQQLEQARQRYALVGPLAALEVV
QAAGPGLPRLRGQANGEQRLSDRRQMAELLQQSWQDQGRPSAARLLHWLNEQQLFGGEGE
DAQQRIVASESMVTLTTLHSSKGLEFPLVWCPTLWEVDGGVDAEAPFRAWDPSQQRRVLE
LSRRSGSSPRAERLMEARLEGWQERLRLGYVALTRAKHQLCLDWGRIKDSGASLPAWLLH
PELRQQEAEQPWQAIADHISRASDLRQALQHRCDELGIHLEDLNPEAPPAYRPAANTQPL
AAAAAMIPPRRPFSSWGRWSYSRLHDQSQTLSPSAREEEGFDPDRESSPEDPGGAEDPCW
RELPGGASFGTLVHAILEQLDFEADLSSPEVRQLVRDEVARSGLDPQLSNSLLGAIEVLL
QRPLGGPLGDCQLNQIASGDTLRELPFDIPLSGFSASPSSDVLGEALEQLAAHHDPVVQS
YARERLQQRQAQLSSGFLNGVIDLIIRRPSRDGTQHWVVLDWKTNRLVRPINDLMAAKDY
WLQAQLYRQAVQRWLHWRLGEETPVRIDAVMLFTRSGEGAWLLDETGQP
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgaaccgctcgatctcaatggccccctcacaggcggcaccgttgtgctggaggcg
agcgctggcaccggcaagacctatgccctcagccacagggtgttgcgggaggtgggcgaa
aacggccgagcgatcgatcagatcctggtggtgaccttcacgcgcgcggctgccgcggaa
atccgccgccggattcgcacccgcctggaggaggcctcaacggtgctggcctaccgcctg
gccaatgacaacagactcgccagtgatcccaccttggacgagctgatcagccgctgggcg
gcatcgcctcagggtgtggaggtgctgctgaatctgctgcaagcgattgatcgcatcgat
ctggcccccatcaccacgatccatggcttcatccagcgcttaatccaggacaacggcaca
ctgctgggcctcgatccccaacgacgcctacgcgaaggcgggcgcagcctgctgcaggag
ctcgtcaatgactggcggcgcagcgttctctcaccggccccagcgccatggcaggcctgg
gttcaaagccacagcgacttgagcctcgacgggctgatgaagctggcccagctcgtcgac
gacgaccgcgacatgctgcttccagaaccgctggacacaggtgccacggccgtggatggc
tggcagcaacggcacgaacggttcgagcgcctgctcgccagtgatggcatcagcaccggc
gaagccatgcagcaactctgcaaaggcacaggcaacaagagcccagccggagcgctacta
ggcaaaaccaagctggcccagctgcccgatctgatcgcgatcgcgcgcgatcgcaacgac
atcaagacctaccggaaattggtgcaggccttcagcaccagtcagctcaagcgcgtgttg
gccgaccccgatcaagcccccagcagtggtcttcatagggcagcggaacagttgtgtttt
gaacccatcgagcagttgctcaccgacttggtgcacgccttgagacaaggggcttggcaa
cggcgacagctcaagcaggaaatgagctttggcgatctactggaacgggttgatcccgcc
cgcttgagtccgcctgtgttggccgggctgaagcaatggcgacagcagcagttgagctgc
tgcttgatcgacgagtttcaggacaccgacccaattcagtggcgcctgtttgccgcctta
tttgatggcgaagctcccttgaccctgatcggggatcccaaacaagcgatctatcgcttt
cgcggcggcgacatccgcacctatcgatccgccgtttcaacgccagagcggcaacggttc
tcactcgacaccaaccgccgtagcgacccagccctgttgagcgtgctgaaccgtttgttt
gccggggagggcagctttggcagcccaaccatcgactaccggatggttcaggcgcccgag
cacgccagcccttcgcgattgcgttgcgccgatggcagcccagccccgccggtgcgcatg
cgctggctgggggaagccgacgggggcaaacccctcaaattgggggagctgcgcgactcg
ttgccgcaacgggtctgcgatgacctgcagcgcaccctctccagtggcatggaactgcag
cagggcgatggttggcgagcgctgcacccgggtgatctcgccgtgctggtgggccgcaac
cgcgaagccgtggccctgcagcgggagctgcaacgccggggcatccccgcgcgcattggc
cggggaggtgatctctggcagagcccagaggccgccagcctcagcctgtggctcgagagc
agcgagcgccagggggatcggcgtgcggcagcggccttggctctctccagcgtcggcggc
ttcctggccgccgagctcagcggctggagtcccagcgactggggagcctggctgcaacag
ctggaacaagcgcgccagcgctatgccctggtgggtcctctggcggccctggaggtggtg
caagccgcaggcccaggcctaccgcgattgcgggggcaagccaatggcgagcagcgcctc
agtgatcggcgccaaatggcggaactgctgcaacagagctggcaagaccagggccgtcca
tcggccgccaggctgttgcactggctcaacgagcagcagctgtttggaggtgagggggaa
gacgcgcagcaacgcattgtggccagcgagtcgatggtgaccctcaccaccctgcattcg
agcaaggggctggaatttcccctggtgtggtgccccaccctctgggaagttgatgggggc
gtcgatgcggaagccccgttccgcgcgtgggatcccagccaacagcgtcgggtgctggag
ctcagccgccgcagcggcagcagtccacgggccgaacgcctgatggaagcgcgcctcgag
ggatggcaggaacggctgcgtttgggctacgtggccctgacccgcgccaagcaccagctc
tgtttggactggggccggatcaaagacagtggcgccagcctgccggcctggttgctccat
ccggagctgcggcaacaggaggctgagcagccctggcaggccattgctgatcacatcagc
cgggccagcgatttacgccaagccctgcagcaccgctgcgatgaactgggcattcatctg
gaggacctcaaccctgaggcgcccccggcctaccgccctgctgccaacacccaacccttg
gccgcagccgccgcaatgattccgccccgacgccccttcagcagctgggggcgctggagt
tacagccggctgcacgatcaaagccaaaccctcagcccctcggcgcgcgaggaggagggc
tttgaccccgaccgggagagcagcccagaggatcccggcggcgctgaagatccctgctgg
cgggagttacccggtggcgccagttttggaaccctggtgcacgccatcctcgagcagctg
gatttcgaggccgatctcagcagccctgaggtgcgtcaattggtgcgcgatgaggtggcc
cgctccggcctcgatccgcaactaagcaacagcctgctgggggcgattgaggtgttgctg
caacgccccctgggcggcccccttggggattgccagctcaatcaaatcgccagcggcgac
accctccgggagctgccgttcgacatccccctgagtgggttttcggcctcccccagcagc
gatgtgctcggcgaggcgctggagcaactcgccgcccaccacgacccggtggtgcagagc
tacgcccgcgagcgactgcagcagcggcaagcgcaactgagcagcggctttctcaatggg
gtgatcgatctgatcatccgccggccaagccgtgatggaacccaacactgggtggtgctc
gattggaaaaccaaccggctggtgcgccccatcaacgacttgatggccgccaaggactac
tggctgcaggcccagctctaccggcaagccgttcagcgctggctgcactggcggcttggg
gaggagacccccgtgcgcattgatgcggtgatgctcttcacccgcagcggcgagggggcc
tggctgctggatgagacggggcaaccatga
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