Synechococcus sp. RCC307: SynRCC307_1560
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Entry
SynRCC307_1560 CDS
T00523
Name
(GenBank) Superfamily II DNA/RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
syr
Synechococcus sp. RCC307
Pathway
syr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SynRCC307_1560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syr03019
]
SynRCC307_1560
03009 Ribosome biogenesis [BR:
syr03009
]
SynRCC307_1560
Enzymes [BR:
syr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SynRCC307_1560
Messenger RNA biogenesis [BR:
syr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SynRCC307_1560
Ribosome biogenesis [BR:
syr03009
]
Prokaryotic type
rRNA helicases
SynRCC307_1560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Cas3-like_C_2
HEM4
Transketolase_C
AAA_19
P-loop_SecA
Flavi_DEAD
B12-binding
Motif
Other DBs
NCBI-ProteinID:
CAK28463
UniProt:
A5GUA4
LinkDB
All DBs
Position
1377349..1379031
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AA seq
560 aa
AA seq
DB search
MTQTDQLVVSNESTSGFAGFGLPDSLLEALTKCGYEQPSPIQAAAIPELMLGRDLLGQAQ
TGTGKTAAFALPLLARINLEARHPQVLVLAPTRELAIQVSEAFQRYASCTPGLHVLPLYG
GSDFRDQIHKLRRGVHVVVGTPGRVMDHMRQGTLNVSQLETLVLDEADEMLRMGFIDDVK
WVLEQLPSERQVVLFSATMPPEIKRISQQHLQNPAEVIIRTQKADASRIRQRHILLPHQQ
KLSALLRVLEAHGPGGVIIFARTKAVTVTVAEALEAEGIACSVLNGDVPQSLRERTIERL
KQGRIDVLVATDVAARGLDVDRIGLVVNYDAPFDSEAYVHRIGRTGRAGRQGDAILFLSY
RERRLLHSLERAVGSSIDAMDVPSDAEINQQRLDNLQQQLSDLVSEPVPEDRQQEVALMG
EILQRLQRESDVTPDQLALAALRLAQGDSPLLVVPQPPMPVNNRNPQGRGQERRSPGRVQ
QSMERFRVEVGWQDRIKPGHLVGAIANESGLDGRQIGKITIFDDYSTVDLPEGMPPELMK
RLQGVRVMQKELRISRQAMG
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
gtgacccaaacagaccaacttgtcgtgtcgaacgaatccaccagcggctttgctggcttc
ggtttgcccgactccctgctcgaagcgctgacgaagtgcggctacgagcagccctcgcca
atccaagcggcagcgatccctgagctgatgctcggccgtgacctgctcggccaggcccaa
accggcaccggcaagacagcagcctttgccctgcccctgctggcgcgcatcaatctcgaa
gcacgccacccgcaggtgctggtgctggcgccaacacgcgagctggcaattcaggtgagc
gaggccttccagcgctatgcgtcctgcacgcctgggctgcacgtgctgccgctctatggc
ggttccgatttccgcgatcagatccacaagctgcgccgcggcgttcacgtggtggtgggc
actccaggccgggtgatggatcacatgcgccaaggcaccctgaacgtctcccaactggag
acattggtactcgatgaagccgacgagatgttgcgcatgggcttcatcgatgacgtgaag
tgggtgcttgaacagctccccagcgagcgtcaggtggtgctgttctcggcaacgatgccg
ccggaaatcaagcggatctctcagcagcatctgcagaaccccgctgaagtgatcatccgc
acgcagaaagcggacgccagcaggattcgccaacgccacatcctgctgccccatcagcaa
aaactgagcgccctactgcgggttctcgaagcccatggccctggcggggtgatcatcttt
gcccgcaccaaagccgtcacggtgacggtggctgaagccttagaggccgagggaatcgcc
tgctcagtgctcaatggtgatgtgccccagtcgctgcgtgagcgcaccatcgagcgcctc
aagcaagggcgcatcgacgtgctcgtggccaccgacgtggcggctcgcggactcgacgtg
gatcgcattggcctggtggtcaactacgacgcacccttcgatagcgaggcctacgtgcac
cgcatcggccgcaccggacgcgccggacgccaaggcgacgccatcctcttcctctcctac
cgggagcgccgtttgctccacagcctcgagcgcgctgtcggcagcagcatcgacgcaatg
gatgtgccgagcgatgcggagatcaaccagcagcgcctcgacaacctgcagcagcagctc
agcgatctcgtcagcgaaccagtccctgaagaccggcagcaggaagtggccttgatgggc
gagatcctgcagcgcctgcaacgggaatcggatgtcacccccgatcagttggctctggcc
gccctgcgcttggcccagggggattcaccgctgctggtggtgccgcaaccaccgatgccg
gtcaacaaccgcaatccacaaggtcgcggccaagagcgccgcagccctggccgggtgcag
cagtcgatggagcgtttccgcgttgaggtgggctggcaagaccgcatcaaaccgggccat
ctggtgggtgccatcgccaatgaaagcggcctagacggtcgtcagatcggcaagatcacg
atctttgatgactacagcactgtggatctgcccgaggggatgccaccggaattgatgaag
cgcctgcaaggggttcgggtgatgcaaaaggaattgcgcatcagccgccaggccatgggc
tga
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