Synechococcus sp. RCC307: SynRCC307_1956
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Entry
SynRCC307_1956 CDS
T00523
Symbol
rpoC2
Name
(GenBank) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
syr
Synechococcus sp. RCC307
Pathway
syr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
syr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SynRCC307_1956 (rpoC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
syr03021
]
SynRCC307_1956 (rpoC2)
03400 DNA repair and recombination proteins [BR:
syr03400
]
SynRCC307_1956 (rpoC2)
Enzymes [BR:
syr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SynRCC307_1956 (rpoC2)
Transcription machinery [BR:
syr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SynRCC307_1956 (rpoC2)
DNA repair and recombination proteins [BR:
syr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SynRCC307_1956 (rpoC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
Biotin_lipoyl_2
Biotin_lipoyl
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
CAK28859
UniProt:
A5GVF0
LinkDB
All DBs
Position
complement(1695578..1699684)
Genome browser
AA seq
1368 aa
AA seq
DB search
MTSSSKPARKTSKSKSKASKAAEAPAAPSNELSREAPTFQNKVIDKKALRSLVAWSYKHH
GTAATSALADDLKDLGFRFATQAAVSISVDDLRVPGDKSTLLQEAEDQITATEERYRLGE
ITEVERHTKVIDTWTETNERLVQSVRRNFDENDPLNSVWMMANSGARGNMSQVRQLVGMR
GLMANPQGEIIDLPIRTNFREGLTVTEYVISSYGARKGLVDTALRTADSGYLTRRLVDVA
QDVIVREDDCGTTRSIKVAADDNGKYKSRLVGRLLAEDVVDGAGEVIATRNTEVDPPLSA
RIEAAGIAQVQVRSPLTCEAARSVCRKCYGWALAHNELVDLGEAVGIIAAQSIGEPGTQL
TMRTFHTGGVSTAETGVVRSVVEGSVEFSAKAKVRPHRTPHGVEAQLAETDFSLTVKPSG
KGKTQKLDVTAGSILFVNAGGSVPNDTILAQISSGSAVKKSVEKATKDVVCDLAGQVRYE
DVIQPKEVPDRQGNITLKAQRLGRLWVFSGDVYNLPPNAMPVVQGGANVKTGEVLAESRQ
VSEFGGAVRLRESQGDSREVEIVTSSLTLKDCKLVATTTHSGQIWHLESKDNTRYRLNTE
PGTKIANGEVIAELADDRFRTQTGGLVKFAPGLAIKKARSAKNGFEVSKGGTLLWIPQET
HEINKDISLLMIEDGQWIEAGTEVVKDIFSQTAGIVTVTQKNDILREIIVRSGQLHLVSD
SKVLARYTDGGGKMVNPGEEIAPGLKAEAMHMVEAVDTPEGGALLLRPVEEYAIPNEAHM
PELGSVKQANGPSMGLKAVQRLAFKDGELVKSVEGVELLRTQLLLETFDTTPQMTVDVES
AQDKRAKTIQRLQLTILETHLVRRDTLSDASHGSTHTEVKVADGDNIKRGDVVATVQILC
KDDGVAQLPDRKDDEPIRRLIVERPSDTITVDLGGSKLSLKAGQRVVEGDDLGGGLTCPH
SGQVEEVKGSSLTLRVGRPYMVSPDSILHVRDGDLVLRGDTLAQLVFERAKTGDIVQGLP
RIEELLEARRPRESAVLCRKAGTIKVEQPEGEDNPTVSVNEGEELHTEYPILLGRTVMVS
DGQEVKAGDLLTDGPINPHELLEVIFEDLRGPLPTMDAANQAIGRLQTALVQEVQNVYKS
QGVTIDDKHLEVIVRQMTSKVRIEDAGDTTLLPGELIELRQVDQVNQAMAITGGAPAEFT
PVLLGITKASLNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGTGF
SGFDEQLKAEALPHPDILGEENAGYRRATNLRPDYTVEMPLPQSNTAVLDDPSDTELEAT
RSRHGIEDRTNLAAFARPAAGEELAEEHVPDPGALEGLQEEGLLSQDS
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atgaccagctcctccaagcccgcccggaagacctccaaatccaagtcgaaagccagcaaa
gctgctgaagcccctgcggcacccagcaacgagctgtctcgtgaggcgcccaccttccag
aacaaggtgatcgacaaaaaggctctgcgctcgctggtggcttggtcctacaagcaccac
ggcaccgcggccacctcagctcttgctgacgatctcaaggatctgggcttccgtttcgcg
acccaggccgccgtgtcgatttcggttgacgatcttcgcgttcctggcgacaaaagcacc
ctgctccaggaggccgaagatcagatcacggcgaccgaggagcgctacaggcttggtgaa
atcaccgaggtggaacgtcacaccaaggtgatcgacacctggactgagaccaatgagcgt
ttggttcagtccgttcgccgcaacttcgacgagaacgatccactcaactcggtgtggatg
atggctaactccggcgcccggggaaatatgtcccaggtgcgtcagctggttggcatgcgc
ggtctgatggccaacccgcaaggggagatcatcgacctcccaattcgtaccaatttccgc
gaaggcctcacggtcaccgagtacgtcatttcctcctacggcgctcgtaagggcttggtg
gataccgcgcttcgcaccgcggactcgggctacctcacccgccgcttggtcgacgtcgct
caagacgtcatcgtccgtgaagacgactgcggcaccacccgcagcatcaaggtcgccgcg
gatgacaacggcaagtacaaatcccgcctggtcggtcgcctgctggctgaagacgtcgtc
gacggcgctggggaagtgatcgccacccgcaacactgaggtggaccctccgttgagtgcg
cgcattgaggcggctggcattgcccaggtgcaggtgcgctctccgctcacctgtgaggcg
gcccgctcggtttgccgcaagtgctacggctgggctctggctcacaacgaactggtggac
ctgggtgaagccgtgggcatcatcgcggcccagtccatcggtgagcccggtacgcagctg
accatgcgcaccttccacaccggtggtgtgtcgaccgctgaaacgggtgtggttcgttcg
gtggtggaaggcagcgttgaattcagtgccaaggccaaggttcgtccccaccgcaccccg
cacggcgtcgaagcgcagctggctgagaccgacttctctctgaccgtgaagcccagcggc
aagggcaagactcagaagctggatgtcactgccggttcaatcctgttcgtcaatgccggt
ggcagtgtccccaacgacacgatcctggctcagatttccagtggttcagcggtcaagaag
agcgttgaaaaagccaccaaggatgtggtctgcgacctggctggtcaggttcgttatgag
gatgtcattcagcccaaggaggtgcccgaccgccagggcaacatcactctcaaggcccag
cgtctcggccgtctgtgggtgttcagcggcgacgtttacaacctgccgcccaacgccatg
ccggtggtccaaggtggcgccaatgtcaaaaccggtgaggtgctggcggaaagccgtcag
gtttccgaattcggtggtgccgtgcgcctgcgcgaatcccagggtgattctcgcgaagtt
gagatcgtcaccagcagcctcacgctgaaagattgcaagctggtcgccaccacgacccac
agcggtcagatctggcacctcgagagcaaggacaacacccgctatcgcctcaacaccgag
cccggcaccaagatcgccaatggcgaggtgatcgctgagctggctgatgaccgcttccgc
acccagaccggtggtttggtcaaatttgctcctggcctggccatcaaaaaggctcgcagt
gccaagaacggttttgaagtcagcaaaggcggcaccctgctctggattccgcaagaaacc
cacgagatcaacaaggacatctccctgttgatgatcgaggacggtcagtggatcgaggcc
ggcactgaggtcgtcaaggacatcttcagccagaccgccggcatcgtcacggtcacccag
aagaacgacattcttcgcgaaatcatcgtgcgctcagggcagttgcacctcgtctctgac
agcaaggtgctggctcgctacaccgatggtggcggcaagatggtcaaccccggcgaagag
atcgctcctggcctcaaggctgaggccatgcacatggtcgaagccgtcgataccccggaa
ggtggggcgctgctgcttcgccctgttgaggagtacgccattcccaacgaggcccacatg
ccggagctcggctccgtgaagcaggccaatggcccatcgatggggctcaaagctgttcag
cgtcttgctttcaaagacggcgaattggtgaagtccgtcgagggtgtggaactgctgcgc
acccagctgctgctggaaaccttcgacaccactccccagatgacggtggatgtggaatca
gcgcaagacaagcgcgccaagaccatccagcgtctgcagctcaccatcctggaaacccat
ctggtgcggcgcgacaccctctccgatgccagccatggctccacccacaccgaggtgaag
gtggccgatggagacaacatcaagcgcggcgatgtggtcgccaccgttcagatcctctgc
aaggacgacggtgtggctcaattgccagatcgcaaggacgacgaaccgattcgccgtttg
atcgttgagcgccccagcgacaccatcaccgttgacctcggtggcagcaagctcagcctc
aaggctggccagcgtgttgtggaaggcgatgaccttggtggcggtctcacctgcccccat
agcggtcaggtggaagaggtcaaaggcagcagcctcaccctgcgggttggacgtccttac
atggtctcccccgactcgatcctgcacgtccgcgatggcgatttggtgctccgcggagac
accctggcccagttggtgtttgagagggccaagaccggtgacatcgttcagggtctgccc
cgtattgaggaactgctcgaggcccgtcgtccccgtgagtccgctgtgctctgccgtaag
gccggcaccatcaaggttgagcagcccgaaggcgaggacaaccccaccgtgtcggtgaac
gaaggcgaagagctgcacaccgagtacccgatcctgctgggccgcaccgtgatggtcagc
gatggccaagaggtcaaagcgggcgacctgctcaccgatggtccgatcaacccccacgaa
ctgttggaggtgatcttcgaagacctgcgcggtcccctgccaacgatggatgcggccaac
caggcgatcggacgcttgcagaccgctttggtccaagaggtgcagaacgtctacaagtcc
cagggcgtgaccattgatgacaagcacctcgaagtgatcgtgcggcagatgaccagcaaa
gtgcggattgaagatgccggcgacaccacccttctccccggtgagctgattgagctgcgc
caggtggatcaggtgaaccaggccatggcgatcaccggtggggctccggctgaattcaca
ccggttctgctgggtatcaccaaggcctctctgaacaccgacagcttcatctcggcggcc
tccttccaggagaccacccgtgtgctgacggaagccgcgattgagggcaagagcgattgg
ctgcgcggtctcaaggagaacgtgatcattggtcgtctcatcccggccggcactggcttc
agtggctttgatgagcagctcaaggcggaggccttgccccatcccgacatccttggcgag
gaaaacgccggctaccgccgcgccaccaacctgcgcccggattacaccgtggagatgccg
ctgcctcagtcgaatactgcggtgttggatgatccatccgataccgagttggaggccacc
cgcagccgccacggcattgaggatcgcactaacctcgcagcctttgctcgccctgcggcg
ggtgaggaactcgccgaagagcatgtccctgatcccggtgcccttgagggcctccaggaa
gaaggcctgctcagccaagacagctga
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