Synechococcus sp. RCC307: SynRCC307_2015
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Entry
SynRCC307_2015 CDS
T00523
Symbol
csdB
Name
(GenBank) Selenocysteine lyase
KO
K11717
cysteine desulfurase / selenocysteine lyase [EC:
2.8.1.7
4.4.1.16
]
Organism
syr
Synechococcus sp. RCC307
Pathway
syr00450
Selenocompound metabolism
syr01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
syr00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00450 Selenocompound metabolism
SynRCC307_2015 (csdB)
Enzymes [BR:
syr01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.1 Sulfurtransferases
2.8.1.7 cysteine desulfurase
SynRCC307_2015 (csdB)
4. Lyases
4.4 Carbon-sulfur lyases
4.4.1 Carbon-sulfur lyases (only sub-subclass identified to date)
4.4.1.16 selenocysteine lyase
SynRCC307_2015 (csdB)
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Gene cluster
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Motif
Pfam:
Aminotran_5
DegT_DnrJ_EryC1
Beta_elim_lyase
Cys_Met_Meta_PP
Motif
Other DBs
NCBI-ProteinID:
CAK28918
UniProt:
A5GVK9
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All DBs
Position
complement(1747442..1748731)
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AA seq
429 aa
AA seq
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MASMARELSAMTAAALGLDLAQRTRGDFPVLDQQIHGRPLIYLDYAATSQKPRQVLEALD
HYYRCDNANVHRGAHSLSARATDAFEAARNTTAALVGSADPAEIVFTRNATEAINLVAMT
WALDQLQPGDEILTTVMEHHSNLVPWQMVAARTGAVLRHVGLTATGELDLDDLRGQLNGR
TRLVALAHVSNTLGCLNPIAEVVSLAHAVGARVLVDACQSLPHLPVDVKQLECDWLVGSS
HKLCGPTGMGFLWGRRELLEQAPPFLGGGEMIDEVFLERSTWAALPHKFEAGTPAIGEAI
GMAAAIDYIQALGLAAIHRWEQRLTARLWEGLSRIDGVRLLGPSPEQQPDRGALAAFVVD
GLHANDLAALLDASGICIRSGHHCTQPLHRLLGLSGSARASLGFTTTEAEIDAFLEELAS
SAAFLREHA
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
ttggcatccatggcaagggagctcagcgcgatgacagctgccgctcttgggctggatctg
gcacagcgcacccgtggggatttccctgtgctcgatcagcagatccatggccgtccgctg
atctatctcgattacgcggccaccagccagaaaccgcgccaggtgcttgaagccctggat
cactactaccgctgcgacaacgccaatgtgcaccgcggtgcccacagcctcagtgctcgt
gccactgatgcctttgaagcggcccgcaacacaacggcagccttggtgggatcggctgat
ccagctgaaatcgtgttcacccgcaatgccaccgaggccatcaatttggtggcgatgact
tgggcgctcgatcagctccaacccggagacgagatcctcaccacggtgatggagcaccac
agcaacctggtgccttggcagatggtggcagcgcggacgggagccgtgttgcgacatgtg
gggctcaccgccaccggtgagttggatctcgatgatctgcgcggtcagctcaacgggcgc
acccgcctggtcgcgttggcgcatgtcagcaacaccctggggtgcctcaatcccatcgct
gaggtggtgtccctcgcccacgccgttggcgcccgagtgctggtggatgcctgccaaagc
cttccccatctgccggttgatgtgaagcagctggagtgtgattggttggtgggatccagt
cacaagctctgtggccccacaggcatgggctttctttggggtcggcgtgagttgctggag
caggccccaccgttcctcggtggtggcgaaatgattgatgaggtgttcctggagcgcagc
acctgggctgctttgccccacaaatttgaagcgggaactccagcgattggtgaggccatc
ggtatggctgccgccatcgactacatccaggcgttgggtcttgcggcgatccatcggtgg
gagcagcgcctcaccgcccgtctttgggagggcttgagccgcattgatggggtgcgtttg
ctcggcccgagccccgagcaacagcccgatcgcggtgctttggctgcttttgtcgttgat
ggcctgcatgccaacgacttggccgccttgctcgatgccagtggcatttgcattcgcagc
ggccatcactgcacccagccgttgcacaggctcttaggcctgagtggatcggcgcgcgcc
agtcttggtttcaccaccaccgaagccgagatcgacgcgttcttggaggagttggcttca
tcggctgcatttctgcgtgagcacgcctga
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