Synechococcus sp. RCC307: SynRCC307_2494
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Entry
SynRCC307_2494 CDS
T00523
Name
(GenBank) HrpA-like helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
syr
Synechococcus sp. RCC307
Brite
KEGG Orthology (KO) [BR:
syr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syr03019
]
SynRCC307_2494
Enzymes [BR:
syr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SynRCC307_2494
Messenger RNA biogenesis [BR:
syr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SynRCC307_2494
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
CON_HrpB
DEAD
AAA_30
ResIII
Motif
Other DBs
NCBI-ProteinID:
CAK29397
UniProt:
A5GWY8
LinkDB
All DBs
Position
complement(2179561..2182080)
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AA seq
839 aa
AA seq
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MASSAWLPIEPLLPQLLETLRVHGRLVLQAPPGAGKTTRVPLALAAAEPWSQGRVLVLEP
RRLAAKLAARQMARSLGEAVGETVGYRVRLDSCVGPNTRVELVTDGLFLRLLQEDPALSG
VSAVLFDEVHERGIGSDLALALTWQARQLLVPDLAVVAMSATLDAEPLARLLDNAPVLSS
EGRAFPVETIYAERPAPDQPSPRAIADQVRPAIREALATQQGSVLVFLPGQAEIRRLMEQ
LQDALPADVELTPLFGDLDARAQDAAVAAAAPGRRKVVLATALAESSLTIDGIEVVIDAG
WSRVSRFDPSTGLARLLTEKAAVAQADQRRGRAGRLGPGVCWRLWTAVDQQRRPLQPQPE
ILSSDPAPLALELALWGSAEGEELAFLDPPPSGPLQQARVLLQELGAMLPNGQPTPRGRA
MAALGLHPRLGAMVLRAADLQLPATALKLPPLSAEQRQALACVMAALLGERDPLRQDAVG
ADLCLRLDLLEQRGRAGAIAPIRQLALQLRRQLRLPKSVPLLPEGWAAWVGIVLALAYPD
RLALPRAQERPGVMVLSSGRGAALEPQDPLAASEALVAAHLDGDRRQARIWLAAPLPRAA
LELLQPEQLLDDDVVEWDDERQQVMARRQRRLGALLLSDAPQPQPDAVAVQAVLLEQLQR
RGLQWLGWTPAQMQLRGRLAFLHQLDPELWPAVDEASLLAELELWLGPHLEGVRSAAQLQ
AIDLQGALLDRLDWRARSQLDELAPLRWTLPSGRNGRIDYSGEEPVLSSRLQDFFGLQQT
PRLAGGRHAVLVHLLSPAGRPAAVTRDLESFWQQGYPLVRKDLRGRYPKHRWPEDPLQA
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atggcttcttctgcttggctgccgattgagccgttgttgccgcagctgctggagacgttg
cgcgtccatggccggctggtgctgcaggccccgcctggagcgggcaaaaccacgcgagtg
ccgttggccttggccgcggctgagccttggagccaaggccgggtgctggtgctggaaccg
cggcgtttggccgccaagttggctgcgcgccagatggcccgcagcctgggggaagccgtt
ggtgaaacggtgggctatcgcgtgcggctcgatagctgcgttggtcccaacacccgcgtg
gagttggtgaccgatgggctctttttgcgcctgttgcaagaggacccagccctgagcggc
gtcagtgcggttctgttcgatgaagtgcatgagcggggcattggtagtgatctggccttg
gcgctcacctggcaggcccgccagctgctggtgcccgatctcgctgtggtggcgatgtca
gccaccctcgatgccgagccattggcgcggttgctcgataacgctccggtgctcagcagt
gagggccgtgctttcccggtggaaaccatctatgccgagcggccagcaccggatcaaccc
agtccgcgagcgattgcggatcaggtgcgcccggcgatccgggaggccttggcaacgcag
cagggcagcgttttggtgtttctgcctggtcaggcggagatccgtcgtctgatggaacag
ctgcaggacgcccttccggcagacgtggagctcacgcccctgtttggtgatctcgatgcg
cgcgcccaggacgcggcggtggccgccgcggcgccaggtcgccgcaaggtggtgctggcc
acggccctggcggaaagcagcctcaccatcgatggcattgaggtggtgattgatgcgggc
tggagccgcgtgtcgcggtttgaccccagcaccggtttggcgcggttgttgaccgaaaaa
gctgccgtggcccaagccgatcagcgccgcggccgcgcgggtcgcctggggccaggtgtt
tgctggcggctgtggactgctgtggatcaacagcgccggccgctgcaaccccagcctgaa
attctcagcagtgatcccgctccattggcattggagttggccctttggggctcagctgag
ggggaggagttggcgttccttgatccgccgccttcaggtcctctgcagcaggcccgggtg
ttgttgcaggagttgggcgccatgctgcccaatggccaacccactccccgcggccgagcg
atggcggctttgggcttgcacccgcgcttgggggccatggtgttgcgcgccgctgatctt
cagctgccggccactgcgttgaagctgccgccgttgtcagccgagcagcgccaggccttg
gcctgtgtgatggcggcgctgcttggcgaacgggatcccttgcgccaagacgctgttggt
gccgacctttgcctgcggcttgatctgctagagcagcgaggccgagctggcgcgattgca
cccatccgccagctggcgctgcaactccgccgtcagctgcgtttgcccaaaagtgttcct
ttgctcccagagggctgggctgcgtgggtagggattgtgttggccttggcctatcccgac
cgtttggcgttgccgcgggctcaggagcgccctggcgtgatggtgcttagctctggccgc
ggcgcagctctggagccgcaggatcccctggccgccagcgaagccttggtggcggcccat
ctcgatggcgaccggcgtcaggcccgcatctggttggcagcaccgctgccccgcgcggcc
ttggagttgttgcagcccgaacagctccttgatgacgacgttgtggagtgggacgacgag
cgtcagcaggtgatggcccgccggcagcgccgcctgggtgcgttgctgcttagtgatgcc
ccccagcctcagccggatgcagtggctgtgcaggccgtgctgctggagcagctgcagcgc
cgcggtttgcagtggctcggttggacgccagcgcagatgcagttgcgcggccggctggct
tttctgcatcagctcgatcctgagctgtggccagcggtggatgaggcgagcctgctggct
gagctggagctctggcttggcccgcatttggagggcgtacgcagcgcggcgcagctgcag
gccattgatctgcagggggccttgctggatcgcttggattggcgtgcccgcagccaactc
gatgagctggccccgttgcgatggaccttgccgagtggccgaaatgggcgcattgattac
agcggcgaagagccggtgctcagcagccggctccaagacttttttggcctgcagcagacg
ccgcgtctggcgggcggacgccatgccgtgctggtgcatttgctctctccggctggccgc
ccggctgctgtgacccgagatttggagagtttttggcagcagggttacccgctggtgcgc
aaagacctgcggggtcgttatcccaagcaccgctggccggaggatccgctgcaggcttga
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