Synechococcus sp. RCC307: SynRCC307_2504
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Entry
SynRCC307_2504 CDS
T00523
Symbol
rpoD
Name
(GenBank) Alternative RNA polymerase sigma factor, sigma-70 family
KO
K03086
RNA polymerase primary sigma factor
Organism
syr
Synechococcus sp. RCC307
Brite
KEGG Orthology (KO) [BR:
syr00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SynRCC307_2504 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
syr03021
]
SynRCC307_2504 (rpoD)
Transcription machinery [BR:
syr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SynRCC307_2504 (rpoD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
CAK29407
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All DBs
Position
2189920..2190891
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AA seq
323 aa
AA seq
DB search
MMGTPLEHRSEAPKPRNRSASRSSNRGSGRLSTDSIGWYLSNIGRVPLLTAAEEIELAHQ
VQQMKQLSEIPAEERTPKQRQQVRMGCRARDRMMAANLRLVVSVAKKYQNQGLELLDLVQ
EGAIGLERAVDKFDPAMGYKFSTYAYWWIRQGMTRAIDNSARTIRLPIHISEKLSKMRRI
TRELTHRFGRQPNRLELAHAMGMEPDELEELLSQSAPCASLDAHARGEEDRSTLGELIPD
PSCNDSMESMDRRIQKEHLGTWITQLNEREQKILKLRFGLEGAEPQTLAEIGRQINVSRE
RVRQLEAKAILKLRLITNQQQAA
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
gtgatggggacaccactggagcaccgatctgaggcgcctaagcctcggaatcgcagtgcc
tcgcgttcatctaatcgcggctcaggccgccttagcactgattcaattggctggtatctc
agcaatatcggccgagtgccgctgctgactgccgcagaggaaatcgagctggcccaccag
gtccagcagatgaagcaactcagcgaaattcccgctgaggagcgcactcctaagcagcgc
cagcaggtgcgcatgggctgccgcgcccgcgaccgcatgatggccgccaacctgcgcctg
gtggtcagcgtcgccaagaaatatcagaaccaaggcctggagcttctggacttagtgcaa
gaaggggccattggtctcgagcgtgcggtcgacaaattcgacccggccatgggctacaag
ttttcaacgtatgcctactggtggatccgccagggcatgacgcgcgccattgataacagc
gcccgcaccattcgcctgccgattcacatcagcgaaaaactctccaagatgcgccgcatc
acacgggagctcacccaccgctttgggcgtcaacccaatcgcttggaactcgcccacgcc
atgggcatggagcccgatgaactggaagaacttctgagtcagagcgccccttgtgcatcg
ctcgatgcccacgcccgcggcgaggaagaccgcagcaccttgggtgaactgatccctgac
ccgtcctgcaacgactccatggaaagcatggaccggcgcattcaaaaagaacatctaggc
acctggattacccagctcaatgagcgggaacaaaaaatcctgaaattgcgctttggtctc
gaaggtgccgagccacaaacgctggccgaaattggtcgtcagatcaacgtgtcccgcgag
cgggtgcggcaactggaagccaaagccatcctcaagctcagactgatcaccaatcagcaa
caggccgcctga
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