Synechocystis sp. PCC 6803 PCC-N: SYNPCCN_2906
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Entry
SYNPCCN_2906 CDS
T01778
Symbol
slr0551
Name
(GenBank) hypothetical protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sys
Synechocystis sp. PCC 6803 PCC-N
Pathway
sys03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sys00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SYNPCCN_2906 (slr0551)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sys03019
]
SYNPCCN_2906 (slr0551)
Messenger RNA biogenesis [BR:
sys03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SYNPCCN_2906 (slr0551)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RMMBL
RNase_J_C
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
BAL33823
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Position
3248802..3250724
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AA seq
640 aa
AA seq
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MAKNTQTQALKILPLGGLHEIGKNTCVFEYDDEILLLDAGLAFPTDDMHGVNVVLPDMTY
LRENREKIKGMVVTHGHEDHIGGIAYHLKQFDIPIIYGPRLAMALLRDKLEEAGMLERTN
LQTVSPREMVRLGKSFVVEFIRNTHSIADSYCLAIHTPLGVVMHSGDFKIDHTPIDGEFF
DLQKVAEYGEKGVLCLLSDSTNAEVPGITPSEASVIPNLDRVFSQAEGRLMVTTFASSVH
RVNIILSLAQKHQRKVAVVGRSMLNVIAHARKLGYIKCPDNLFVPLKAARNLPDQQQLIL
TTGSQGEPLAAMTRISNGEHPQIKIRQGDTVVFSANPIPGNTIAVVNTIDRLMMQGANVI
YGKHQGIHVSGHASQEEHKMLLALTRPKFFVPVHGEHRMLVKHSQMAQAQGIPSENIVIV
NNGDVIELTGDRIRVAGQVPSGIELVDQAGIVHESTMAERQQMAEDGLVTVAAALSKTGT
LLAYPEVHCRGVVMTIQPKLLEELIVRTIENFLTERWSEFTHGSNGSTEVSWNALQKELE
SSLQRLIKRELQSSPMVLLMLQTDTPIELDQVPQNVSTVSATSATPAPRKKVVLTKTPEP
KVKAKPEKKVVTTAEPSAQPVSTTKVYRRSRKRSTTSVSS
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atggctaaaaatactcaaacccaagccctcaaaattcttcccctcggtggcctgcacgaa
attggtaaaaatacctgcgtctttgaatatgacgatgaaattttactgcttgatgcgggg
ctagctttccccaccgacgacatgcacggcgttaatgttgtactgccggacatgacctac
ctgagggaaaaccgggagaaaatcaagggcatggtggttacccacggccacgaagaccac
attggtggcattgcctatcacctcaagcagtttgacattcccattatctacggccctcgg
ttagccatggccctgttacgggacaagctggaggaagccggtatgttggagcgcaccaat
ttgcagaccgtctctccccgggaaatggtgcgtttgggcaaatcctttgtggtggaattt
attcgtaacacccactccatcgccgacagctattgtctagctattcacacacctctgggg
gtagtgatgcacagtggagattttaaaatcgaccacactcccattgacggggaatttttc
gacctgcaaaaggtggcggagtatggcgaaaaaggggtgctctgtttactgagtgactcc
accaatgcggaagtgcctggcattaccccctctgaagcgtctgttatccccaacctggac
cgggttttttcccaggcggaaggccgtttgatggtgaccacctttgcttcttcggtgcac
cgggtcaatatcatcctcagcttggcccaaaaacatcagcggaaagtagcggtggtgggg
cgatcaatgctcaatgttattgcccatgcccgtaaattgggctacatcaaatgccccgat
aacttattcgtgcccctcaaagcagcccgcaatttgcccgaccaacaacaactaattttg
accactggctcccagggagaacctctggcggccatgacccgcatttccaacggtgagcat
ccccagattaaaattcgccagggggatacagtggtcttttccgctaatcccatccccggt
aataccattgcggtggtcaacaccattgatcgcctgatgatgcagggagccaatgtaatt
tacggcaagcatcagggcatccacgtttctggccatgcttcccaggaagaacacaaaatg
ttgttggcccttactcgacctaaattctttgtccccgtccatggggaacaccgtatgttg
gtcaagcattcccagatggcccaggcccagggtattcccagcgaaaatattgttattgtc
aataacggcgatgtaattgaactgaccggcgatcgcatccgggtggcaggacaagttcct
tccggcattgaattggtggatcaagcgggtattgtccatgagagcaccatggctgaacgg
caacaaatggccgaagacggtttggtgacggtggcggcagccctaagtaaaactggcaca
ctgttagcctatcctgaggtacattgccggggtgtggtgatgaccattcagcctaagttg
ttggaagaactaattgtccgcaccatcgagaatttcctcacagaacgctggtcagagttc
acccatggttccaacggctccacagaggttagctggaatgcgctgcaaaaagaattggag
tctagcttgcaacgcctgatcaaacgggaattacagagtagccccatggttttactgatg
ttgcaaaccgacacccccatcgaattggatcaggttccccagaatgtaagcactgtcagt
gcgacttctgctacaccagccccccgcaaaaaagtggtcctgactaaaaccccagaacca
aaagtgaaagctaaaccagaaaagaaagtggtcaccactgccgagcctagcgcccaaccg
gtcagtaccactaaggtttaccgtcgtagccgcaaacgctctaccacttctgtttcttcc
taa
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