Synechocystis sp. PCC 6803 GT-I: SYNGTI_0791
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Entry
SYNGTI_0791 CDS
T01777
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
syt
Synechocystis sp. PCC 6803 GT-I
Pathway
syt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
syt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SYNGTI_0791 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
syt03021
]
SYNGTI_0791 (rpoB)
03400 DNA repair and recombination proteins [BR:
syt03400
]
SYNGTI_0791 (rpoB)
Enzymes [BR:
syt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SYNGTI_0791 (rpoB)
Transcription machinery [BR:
syt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SYNGTI_0791 (rpoB)
DNA repair and recombination proteins [BR:
syt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SYNGTI_0791 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DUF3786
Motif
Other DBs
NCBI-ProteinID:
BAL28538
LinkDB
All DBs
Position
complement(857660..860968)
Genome browser
AA seq
1102 aa
AA seq
DB search
MTNLATTMLPDLIEIQHASFHWFLEEGLIEELNSFSPISDYTGKLELHFLGKDYKLKQPK
YDVDESKRRDASYSVQMYVPTRLINKETGEIKEQEVFIGDLPLMTERGTFIINGAERVIV
NQIVRSPGVYYKKELDKNGRRTYSASLIPNRGAWLKFETDKNGLVYVRIDKTRKLSAQVL
LKAIGLSDNEILDSLSHPEFYQKTLDKEGNPTEEEALVELYKKLRPGEPPTVSGGQQLLE
SRFFDPKRYDLGRVGRYKLNKKLRLNEADTTRVLTPQDILAAINYLINLEFDVGTTDDID
HLGNRRVRSVGELLQNQIRVGLNRLERIIRERMTVSESDALTPASLVNPKPLVAAIKEFF
GSSQLSQFMDQTNPLAELTHKRRISALGPGGLTRERAGFAVRDIHPSHHGRICPVETPEG
PNAGLIGSLATCARVNDYGFIETPYFRVESGRVRKDLDPVYLTADEEDDMRVAPGDIPTD
EEGNIIGESVPIRYRQEFSTTSPEQVDYVAVSPVQIISVATSMIPFLEHDDANRALMGSN
MQRQAVPLLRPERPLVGTGLEAQAARDSGMVIVSRTHGIVTYVDATEIRVQPHSPDNPAE
KGEEIVYPIQKYQRSNQDTCLNQRPLVYAGEDVVPGQVLADGSATEGGELALGQNILVAY
MPWEGYNYEDAILISERLVYDDVYTSIHIEKFEIEARQTKLGPEEITREIPNVGEDALRN
LDEHGIIRIGAWVESGDILVGKVTPKGEADQPPEEKLLRAIFGEKARDVRDNSLRVPNGE
KGRVVDVRVFTREKGDELPPGANMVVRIYVAQKRKIQVGDKMAGRHGNKGIISRILPIED
MPYLPDGRPIDIALNPLGVPSRMNVGQVFECLLGWAGENLGVRFKITPFDEMYGEEASRD
TVHGLLEEASQRPNKDWVFNENHPGKIQVFDGRTGEPFDRPITVGQAYMLKLVHLVDDKI
HARSTGPYSLVTQQPLGGKAQQGGQRFGEMEVWALEAYGAAYILQELLTVKSDDMQGRNE
ALNAIVKGKSIPRPGTPESFKVLMRELQSLGLDIAAHKVQLSEDGESADAEVDLMIDSQR
RAPNRPTYESLHTEEDLEEEEV
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaccttgccaccacgatgttgcccgatttaattgaaatccaacacgctagtttc
cactggtttttggaggaaggtttaatcgaggaattgaatagtttttcgccgatttctgac
tacacaggcaagctggaactccactttttgggcaaagattacaagctcaaacaacccaag
tatgatgttgatgaatccaagcgacgggatgctagttattcggtgcagatgtatgtgccg
acccgtctgattaacaaagaaaccggggaaattaaggagcaggaagtcttcatcggcgat
ctccccctaatgacagagcggggaaccttcatcatcaatggtgcggagcgggtcatcgtt
aaccaaattgtgcgatcgccaggggtttactacaaaaaagaattagataaaaacggtcgc
cgcacctattccgcttccctgatccccaaccggggggcctggctgaaatttgaaactgac
aaaaatggtctagtctatgtccgcatcgacaagacccgtaaattgtcggctcaagtgctc
ctaaaggcgatcggtctgagcgataacgaaattctcgactccctcagccacccagagttt
tatcaaaaaaccctcgacaaagaaggcaatcccaccgaagaggaagctttggtggaactg
tacaaaaaacttcgccccggtgagccccccaccgttagtggtggtcaacagttattggag
tcccgcttcttcgaccccaaacgctatgaccttggtcgagtgggacgatacaaactcaat
aaaaaactccggctcaatgaagcggacaccacccgggtgcttaccccccaagacatcctg
gccgccatcaactatctgattaatctggaatttgacgtcggcaccaccgatgacatcgac
cacttgggcaatcgacgggtacgttccgttggagaactattgcagaaccaaattcgggtt
ggcttaaatcgcctggaacggattattagggaacgcatgaccgttagcgaatccgatgcc
cttacccctgcttccttggtgaatcccaagcctctagtggcggccatcaaggaattcttt
ggttcctcccaactgtcccagttcatggaccaaaccaatcccctggcggagttgacccac
aaacggcgtatttctgccctcggccctgggggtctaacccgggagcgggccggttttgcg
gtgcgggatattcacccttcccaccacggccgtatttgcccagtggaaacgccggaaggc
cccaatgccggtttgatcggttccttagctacctgtgcccgggtcaatgattacggtttc
attgaaaccccctattttcgggtggagagtggtcgagtcaggaaagatttagaccccgtt
tacctcaccgccgacgaagaagacgacatgcgggtggcccccggggacattcccacagac
gaagagggcaacatcattggcgagtcggtacctattcgctaccgccaggaattttccacc
accagcccagaacaagttgactatgtagccgtttccccggtgcaaattatttccgttgcc
acctccatgatccccttcctggagcatgacgatgctaaccgggccctaatgggctccaac
atgcaacggcaggcagtgcccctgttgcgtcctgaacggcccttggtcggtacaggcttg
gaagcccaagctgctcgcgactccggcatggtaattgtttcccgtacccatggcattgtc
acctatgtggacgccaccgaaattcgggtgcagccccactcccccgataaccctgcggag
aaaggggaagaaatcgtttacccaatccaaaaataccaacggtctaaccaagatacctgt
ttaaaccaacggccccttgtttatgccggggaagatgtggtgcctggtcaagtgctagcg
gacggttccgccacggaagggggagagctggccctgggccaaaacattctcgtagcctat
atgccctgggagggttacaactacgaagacgccattctgatcagtgaaaggttagtctat
gacgatgtttacaccagtatccacatcgaaaaatttgaaattgaagcccgtcaaaccaag
ctaggacccgaagaaatcaccagggaaatccccaacgtcggggaagatgccctgcgaaat
ctggatgaacatggcattatccgcatcggtgcttgggtggaatccggcgatatcctggtg
ggtaaagtcactcccaaaggggaagcagatcaaccccccgaagaaaaactgctgcgggct
attttcggtgaaaaagctcgggacgtgcgggacaactcgctacgggtacccaacggtgaa
aaaggtcgggtagtggatgtgcgagtgttcacccgggaaaaaggagacgaattacccccc
ggtgccaatatggtggtgcggatttacgtagcccaaaaacggaaaatccaagtgggagac
aaaatggccggtcgccacggcaataaagggattatttcccgcattttgcccatcgaagat
atgccctatctccctgatggtcgccccattgacattgcccttaatcccctgggggttcct
tcccggatgaacgtaggtcaggtgttcgaatgcttgctgggttgggctggggaaaacctt
ggtgtgcgcttcaaaattacccccttcgatgagatgtacggggaagaagcgtcccgggat
acggtccatggcttgttggaagaagcctcccaacggccgaacaaagactgggtatttaac
gaaaaccaccccggcaaaatccaagtgttcgacggccgcaccggggaaccctttgaccgt
ccgattaccgttgggcaagcttatatgctcaaactggtgcatttggtggacgataaaatc
cacgcccgttccaccgggccctactccttggttacccaacagcctttggggggtaaagcc
caacaggggggacagcggttcggagaaatggaagtgtgggccctggaagcctacggcgcc
gcctacattttgcaggaactactcaccgttaaatccgatgacatgcagggtcgtaacgaa
gccctcaatgccattgttaaaggcaagagtattccccggcccggtaccccagaatccttc
aaggtgttgatgcgggaactacaatcccttggtttggacattgccgcccacaaagtacaa
ctgtccgaagatggtgaaagcgccgatgcagaagtagatttgatgatcgacagccagcgt
cgggcccccaatcgtcccacctatgagtccctccacaccgaggaggatttggaagaagaa
gaagtgtag
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