Synechocystis sp. PCC 6803 GT-I: SYNGTI_1288
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Entry
SYNGTI_1288 CDS
T01777
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
syt
Synechocystis sp. PCC 6803 GT-I
Brite
KEGG Orthology (KO) [BR:
syt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
syt03032
]
SYNGTI_1288 (topA)
03400 DNA repair and recombination proteins [BR:
syt03400
]
SYNGTI_1288 (topA)
Enzymes [BR:
syt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SYNGTI_1288 (topA)
DNA replication proteins [BR:
syt03032
]
Prokaryotic type
DNA Topoisomerases
SYNGTI_1288 (topA)
DNA repair and recombination proteins [BR:
syt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SYNGTI_1288 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Toprim_2
ALGX
Motif
Other DBs
NCBI-ProteinID:
BAL29035
LinkDB
All DBs
Position
1413045..1415741
Genome browser
AA seq
898 aa
AA seq
DB search
MSKLVIVESPTKARTIRNYLPQDYRVEASMGHVRDLPASAEEVPAAYKDKSWANLGVNVE
DHFSPLYVIPKSKKKVVKELQTALKNADEVILATDEDREGESISWHLLQLLQPKVPIKRM
VFHEITQEAIRSALENCRDIDENLVHAQETRRILDRLVGYTLSPLLWKKIAWGLSAGRVQ
SVAVRLIVQRERARRAFKTAGYWDLKAELEQNKNPFQAKLMTLGGTKLANGSDFDPNTGA
LLPDKQVVVLDEAQAIALKERLTGKPWAVVNTEEKPGVRKPSPPFTTSTLQQEANRKLGI
SARDTMRVAQKLYEEGYITYMRTDSVHLSDQAVTAARNCVQQMYGKEYLSPQPKQYTTKS
KGAQEAHEAIRPAGTEFRIPNQTGLKDRELALYELIWKRTVACQMADARITQLSVLLKVE
DAEFRAAGKRIDFPGYFRAYVEGSDDPDAALENQEVILPPLKVGDRPNCREIDTVGHETQ
PPARYTEASLVKTLESEGVGRPSTYASIIGTIIDRGYVQMRSKALTPTFTAFAVVSLLES
HFPDLVDTGFTSRMEQKLDEIAIGKTQWLPYLQGFFLGESGLENQVKVRQDQIDPAIAKA
IELENLAAKVKIGKFGPYIEIPQGEEIITASIPQDLTPADLNPEQVAVLLKQKTEGPDKV
GIHPETGEPIFILIGAYGPYVQLGEATEENKKPKRTSLPKGVKPEDVTLEMAVGLLALPR
NLGEHPESGKNIKASLGRFGPYVVHDQGKDGKDYRSLKGDDDVLTITLERALELLAEPKR
GRGSRTPLKQLGLHPEDQEPVNLFKGPYGVYIKHGKVNASLPEGETEETITLEKALPLLA
EKAGSGKKTSRKKATTTAKGTKKTTSKKASATGTAKKTTTKRTTRKKAASPDQSSEAG
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaactcgttatcgttgaatcccccactaaagcccgcactatccgcaactatctg
ccccaggattatcgggtggaagcttccatgggccatgtccgggatttaccggcttcggcg
gaggaagtacccgcggcttacaaagataaaagttgggctaatttgggagtcaatgtggaa
gaccatttcagtcccctttatgtgattcccaaaagcaaaaagaaagtagttaaggaattg
caaactgccctgaaaaatgccgacgaagtaattctggccacggacgaagaccgggaagga
gaaagtattagctggcatttgttgcaactgctccagcccaaagtgcccattaaacggatg
gtgttccacgaaattacccaggaagccattcgcagtgcgctggagaattgccgcgatatt
gacgagaatttagtccatgcccaggaaacccgccgcattttagaccgtttggtgggctat
accctttcccctttgctctggaaaaaaattgcttggggactatccgctggccgggtgcag
tcggtggcggtgcggttgattgtgcagcgggaacgggcccgccgggcctttaagaccgct
ggttactgggacttaaaagcagaactggaacagaataaaaatccttttcaggccaagttg
atgaccttggggggcactaaattagccaatggtagcgattttgatcccaatactggtgcg
ttgttgcccgataaacaggtggtggtgctggatgaagcccaggcgatcgccctgaaggag
cgtttaaccggcaagccctgggcagtggtcaataccgaagaaaagcccggtgtccgtaaa
ccgtctcccccctttaccacttccaccctgcaacaggaagccaaccgcaagttaggcatt
tccgcccgggatacgatgcgagtggcccaaaaactctacgaagagggttacatcacctat
atgcggacggattcggtgcatctttctgaccaagcggtgacggcggcccgcaattgcgtg
caacaaatgtacggcaaagaatacctgagtccccagcccaagcagtacaccaccaaaagt
aaaggggcccaggaagcccacgaagccattcgccccgctgggacagagtttcgcattccc
aatcaaacagggttaaaagaccgggaattggccttatatgagttgatctggaaacggacg
gtggcctgccagatggccgatgcccgcattacccaactgagtgtgctgttaaaagtggaa
gatgcggaatttcgcgcggcgggtaaacgcattgatttccccggttatttccgggcctac
gtggaagggtctgatgatcccgatgccgctctggaaaaccaagaagtgattctgcccccc
ctcaaagttggcgatcgcccgaattgccgagaaattgataccgtgggccacgaaacccaa
ccccccgcccgctatacggaagcttcgttggtgaaaacgctggaaagtgaaggggtaggc
cgccctagtacctatgccagcattattggcaccattatcgaccggggttatgtgcaaatg
cggagcaaagctttgacccccaccttcactgcctttgcggtggtgagtttactggaatcc
catttccccgacttagtggatacgggtttcacttcccgcatggagcagaagttagacgaa
attgccatcggtaaaacccagtggctcccctatttacagggctttttcctgggggaatcg
gggctagaaaaccaagtcaaagtgcgccaagaccagatcgacccggcgatcgccaaggcc
attgagctggaaaacctggccgctaaggtgaaaattggcaagtttggcccctatatcgaa
attccccagggggaagaaattattaccgcttccattcctcaggatctaactccggcagac
ctcaaccccgaacaggtggccgtgttgctcaagcaaaaaacggagggccccgataaagtc
ggtatccatcctgaaaccggggaaccaattttcatcctcattggagcctatggcccctac
gtccagctaggggaagcaacggaggaaaataagaaaccgaaacgcacttccctgcccaag
ggggttaaaccggaggatgtcaccctggaaatggcagtgggattgttggccctgccccgt
aatttgggagaacatccggaatcgggcaaaaatattaaagccagtctgggtcggtttggc
ccctacgtagtccatgaccaaggtaaggatggcaaggattatcgttccctcaaaggggat
gatgatgtgttgaccatcaccctggaacgggctttggagttgttggcggaaccaaaacgg
ggccggggcagccgcactcccctcaaacaattgggcttacatcccgaagaccaggagccg
gttaatttgttcaaaggcccctatggggtttacatcaaacatggcaaagttaatgccagc
ttgccggagggggaaacggaagaaaccattaccctagaaaaagctttacccctgttggcg
gaaaaggccggcagcggtaaaaaaactagccgtaaaaaagccaccaccacagcgaagggc
actaagaaaaccacttctaaaaaagctagtgccactggtacggccaagaagaccaccact
aaacgcaccacccggaaaaaagctgccagtccagaccagtccagcgaggctggttaa
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